Transcript Information: R_Transcript_57153.p1


Annotated TAIR IDAT5G65560.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26201012-26203759 | Reverse length=915
E-Value8.8E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9800752579133
Replicate 21.2212133915602
Replicate 32.0569315392463
Condition 2: 8 Hour
Replicate 11.9238893887121
Replicate 22.2360881841186
Replicate 33.8896308472258
Condition 3: 24 Hour
Replicate 13.5608027536847
Replicate 21.7779239309751
Replicate 33.7521779463253


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57153.p1 GENE.R_Transcript_57153~~R_Transcript_57153.p1 ORF type:5prime_partial len:980 (+),score=132.68,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|4.5e-09,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|8.5e-18,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|8.6e-17,PPR_2|PF13041.2|4.4e-13,PPR_2|PF13041.2|9.8e-15,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|9.2e-14,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|6.2e-06,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|8.4e-05,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|2.7e-08,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|3e-11,PPR_1|PF12854.3|7.2e-09,PPR_1|PF12854.3|2.2e-12,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|4.2e-06,PPR_1|PF12854.3|9.1e-08,PPR_1|PF12854.3|4.1e-07,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|4.4e-06,PPR_1|PF12854.3|0.067,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.37,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.41,PPR|PF01535.16|2e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|7e-07,PPR|PF01535.16|2.2e-09,PPR|PF01535.16|0.0046,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|8.2e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.15,PPR|PF01535.16|0.00024,PPR|PF01535.16|5.7,PPR|PF01535.16|0.005,PPR|PF01535.16|1.4e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.00053,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.0029,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.15,MRP-S27|PF10037.5|4.3e+02,MRP-S27|PF10037.5|0.68,MRP-S27|PF10037.5|3.8,MRP-S27|PF10037.5|3.7,MRP-S27|PF10037.5|5,MRP-S27|PF10037.5|4.7e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|6.2e+03,TPR_19|PF14559.2|4.2e+02,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|93,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|22,TPR_19|PF14559.2|2.9e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_57153:2-2941(+)
ACTAACTCTATTCATCTAAGCCGCTCTCTTTCTTTCCCCCAAATTCCCCCCTCTCTCTCCGGCGACCACCCCACCTTCGCCGCCGGCGACTCCGATCCAATCTCCGGCGATTATTCCTTCATGCATGGATTCCTCACCGGCCTCCGATGTTCCTCTGCCACCACTATTATGATTATCATTACAAAATCACCTCGTCAGTACCATTTCCATTTCCCTTTCCATCGTCATCTTTTCTCTCTCATACGTCACCACCACTCTCTCTCCACTATAACAACCACCACCGCCACTTCCTCCTCCGATGTTGACCCCCCTGACGTCACCTCCAACCTCTTCTCTCTCCTCTCCCTCCCAAACTGGCAAAAGAGCCCCTCTCTCAAAAACCTCCTCCCTTCAATCACTCCCTCCCACGTCTCTTCTCTTTTCAACATTTACTCTCACTCTCTCTCTCCTCAATCCGCCCTCAACTTCTTCTACTTCCTTCCTCACCACCTCCCTCACTTCCGACACAACGCCTACTCTCACTCCTCCCTCCTTTCGCTCTTGATTCAGTCCCGAAACCTCGCCATTGCCGAAAAGATTCGCATTTCCATGATCAGGTCTTGCTGTATGACCCCCGACGAAACTATGTTTGTTTTAGATACCCTGCTCAGGTTGAACCAACTGGATGAATCCGAATTCGGTTTCCGTATGAATCTTAGGTGTTATAATTTGTTGCTGATGGCCTTAGCCAGGTTTCTTTTTATTGATGATATGATTCGTGTTTATAACATGATGCTCAATGATAATATTTCGCCTAATATTTATACCTTCAACACCTTGATTAATGGTTATTGTAAATTGGGGAATGTGGTCCAGGCTCAGCTTTATTTCTCTAAGATTTTACAGGCTGGATTGAGTCCTGATACTTTTACATATTCGTCGTTGATCTTAGGTCATTGTAGGAATAAGGATTTGGGTAGTGCTTTTAAGATTTTTAGGGTTATGCCTCAGAAAGGTAGTAGGAGAAATGTGGTTTCTTATAATTATATCATTCATGGTTTATGTGATGAAGGTAGGGTTGATGAGGGTTTTGAATTGTTTTCTAAGATGGAAGTTGAGGACAATTGTTGGCCAAATGTGCGGACGTATACTGTCCTTATATCGGCCTTGTGTAGAGTGGGAAGGGGAGTAGAGGCGATGGCATTGTTTCGGGACATGAGTGGAAAGGGTTGTGTGCCGAATAGTCATACTTGGACCATTTTAATTGATTATATGTGTAAAGAGGGTAGAGTTGATGAAGGTAGGAAACTGTTTGATGAGATGTCGGAGAAGAGGTTGGCACATAGTGTTGTGACTTATAATGCTTTGATTGATGGGTTTTGCAAGGAAGGAAGGGTTGAGGATGCGTTTGAGATTTTGAAACTGATGGAGATGAATAAATGTTACCCTAATGTTCGGACTTACAATGAGCTGATTTGTGGTCTTTGTAGGATAAGAAAGGTGCCGATTGCCATGACTTTGCTTGACAAGATGGTTGAGCATAAACTAGCTCCCACTTTGATTACGTATAACTCGTTGATCGATGGCCAGTGTAAAGATGGCCATATAGAGAATGCATTTCGATTGCTTAGTTTGATGAAAGAAAGTGTCGTGGAACCTGATGAATGGACTTATAGTGCTATCATAGATTCTCTTTGCAAGAAAGGAAGGGTCCAAGAGGCTCAAGCTATTTTCGATAGTCTTAAGGAGAAAGGGGTCAGGGCAAATAAAGTAACGTTCACTGCCCTAATCCATGGTTATTCCAAAGCAGGAAAGATCAATTCTGCTTATGCATTATTTGAGAGGATGCTAGAAGAGAATTGCTCACCAAACTCTTTTGTGTACAATGTCTTGATTGATGGTTTGTTTGGAGAGGATAAAATGGAGGATGCTTTGGTATTGCTAGGGAAAATGGTAGAGGCAAATGTAGTACCAGATGTCTTCACATATTCTATAATCATCAATGGACTGCTAAAAGGTGGTTCTTTTGACCATGCTTATAGGGTTCTAGAGCAGATGATTACTTTGGGATACAAGCCTGACGCGTACACTTACACTTCATTTGTTCGTGCTCATTGTAGAGAAGGAAAATTGGAAGAGGCAGAACACTGGATGACGAAAATGACTGAAGGCGGTATTGTACCCGATGCAGTGACTTATACTGTCCTAATTGACGGATATGGATGCATAAGATCACTAAGTCAAGCTTTTGGTGTCCTCAAGTGCATGATGGATGCTGGTTGTGAGCCTTCTCAGGTTACTTATTCTGTTTTGATTAAGCATCTTTTGATTAATAAGTGGTCTATTCATGATGGAAATGCAACCGATACCGATTTAAATCGAAAAGCCATTGCTAGTGATGTTGCTTGTGTTTGGAAGATAGTGGACTTTGAAACGGTCATGGAACTAATCTACAAGATGAATGTGCATGGATGTGTCCCTAGCATTCGCACTTACACTACTATTGTTTGTGAATTATGCAAGCAAGGAAGTATTCAGCAAGCTCAGCTGCTGGTTGATTACATGAAAAACAGTGGAATTCATCCTCAGGAAGGTATCACTAACTCAATTGTTAAATGCTGCTGCCGGTTAGGGATGCTTGAAGAAGCATCAAGACTGATCAATTACATGGTTGAGTTGGGTGAGTTACCACACTTAGAGTCGTACATACTGCTTATTTGTGGACTTTATGATAAAGGGGATCGGGAACAAGCAGAGGAAGTATTCAATAGCCTACTTTGCTGTGGGTATAATAATGATGAAATAGCTTGGAAACTTCTGATTGATGGCTTGCTGAAGAGGGGCTTTGTTGATAGTTGTTCTGAGCTAGTGAAAATAATGGAGAGTAATGGTTGCCATCCCACCCCTCAGACATATTCCATGTTGATTGAGGGTCTTCTAGGTGGGTCAGAGGGGAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57153.p1 GENE.R_Transcript_57153~~R_Transcript_57153.p1 ORF type:5prime_partial len:980 (+),score=132.68,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|4.5e-09,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|8.5e-18,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|8.6e-17,PPR_2|PF13041.2|4.4e-13,PPR_2|PF13041.2|9.8e-15,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|9.2e-14,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|6.2e-06,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|8.4e-05,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|2.7e-08,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|3e-11,PPR_1|PF12854.3|7.2e-09,PPR_1|PF12854.3|2.2e-12,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|4.2e-06,PPR_1|PF12854.3|9.1e-08,PPR_1|PF12854.3|4.1e-07,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|0.48,PPR_1|PF12854.3|4.4e-06,PPR_1|PF12854.3|0.067,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.37,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.41,PPR|PF01535.16|2e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|7e-07,PPR|PF01535.16|2.2e-09,PPR|PF01535.16|0.0046,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|8.2e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.15,PPR|PF01535.16|0.00024,PPR|PF01535.16|5.7,PPR|PF01535.16|0.005,PPR|PF01535.16|1.4e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.00053,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.0029,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.15,MRP-S27|PF10037.5|4.3e+02,MRP-S27|PF10037.5|0.68,MRP-S27|PF10037.5|3.8,MRP-S27|PF10037.5|3.7,MRP-S27|PF10037.5|5,MRP-S27|PF10037.5|4.7e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|6.2e+03,TPR_19|PF14559.2|4.2e+02,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|93,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|22,TPR_19|PF14559.2|2.9e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_57153:2-2941(+)
TNSIHLSRSLSFPQIPPSLSGDHPTFAAGDSDPISGDYSFMHGFLTGLRCSSATTIMIIITKSPRQYHFHFPFHRHLFSLIRHHHSLSTITTTTATSSSDVDPPDVTSNLFSLLSLPNWQKSPSLKNLLPSITPSHVSSLFNIYSHSLSPQSALNFFYFLPHHLPHFRHNAYSHSSLLSLLIQSRNLAIAEKIRISMIRSCCMTPDETMFVLDTLLRLNQLDESEFGFRMNLRCYNLLLMALARFLFIDDMIRVYNMMLNDNISPNIYTFNTLINGYCKLGNVVQAQLYFSKILQAGLSPDTFTYSSLILGHCRNKDLGSAFKIFRVMPQKGSRRNVVSYNYIIHGLCDEGRVDEGFELFSKMEVEDNCWPNVRTYTVLISALCRVGRGVEAMALFRDMSGKGCVPNSHTWTILIDYMCKEGRVDEGRKLFDEMSEKRLAHSVVTYNALIDGFCKEGRVEDAFEILKLMEMNKCYPNVRTYNELICGLCRIRKVPIAMTLLDKMVEHKLAPTLITYNSLIDGQCKDGHIENAFRLLSLMKESVVEPDEWTYSAIIDSLCKKGRVQEAQAIFDSLKEKGVRANKVTFTALIHGYSKAGKINSAYALFERMLEENCSPNSFVYNVLIDGLFGEDKMEDALVLLGKMVEANVVPDVFTYSIIINGLLKGGSFDHAYRVLEQMITLGYKPDAYTYTSFVRAHCREGKLEEAEHWMTKMTEGGIVPDAVTYTVLIDGYGCIRSLSQAFGVLKCMMDAGCEPSQVTYSVLIKHLLINKWSIHDGNATDTDLNRKAIASDVACVWKIVDFETVMELIYKMNVHGCVPSIRTYTTIVCELCKQGSIQQAQLLVDYMKNSGIHPQEGITNSIVKCCCRLGMLEEASRLINYMVELGELPHLESYILLICGLYDKGDREQAEEVFNSLLCCGYNNDEIAWKLLIDGLLKRGFVDSCSELVKIMESNGCHPTPQTYSMLIEGLLGGSEGS*

Click here to download the sequence:
Link to NCBI Protein BLAST