Transcript Information: R_Transcript_57275.p1


Annotated TAIR IDAT5G64920.1
Annotated Gene NameCOP1-interacting protein 8
Annotated Gene Symbol(s)CIP8
Annotation TypeOrtholog
Chromosome Positionchr5:25944338-25945342 | Reverse length=334
E-Value4.8E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1105.96199411376
Replicate 278.967903903376
Replicate 397.517254337906
Condition 2: 8 Hour
Replicate 193.745882940882
Replicate 2121.213403643
Replicate 3116.59463133563
Condition 3: 24 Hour
Replicate 1116.10091083725
Replicate 289.825054390715
Replicate 3107.05077383228


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57275.p1 GENE.R_Transcript_57275~~R_Transcript_57275.p1 ORF type:complete len:385 (+),score=50.89,zf-RING_2|PF13639.2|5e+03,zf-RING_2|PF13639.2|2.4e-11,zinc_ribbon_9|PF14369.2|2.5e-11,zinc_ribbon_9|PF14369.2|4.3e+03,zinc_ribbon_9|PF14369.2|1e+02,zinc_ribbon_9|PF14369.2|2.1e+03,zf-RING_11|PF17123.1|4.5e-08,zf-RING_11|PF17123.1|6.4e+03,zf-rbx1|PF12678.3|2.6e-06,zf-C3HC4_2|PF13923.2|4.4e+03,zf-C3HC4_2|PF13923.2|9.4e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|2.2e-06 R_Transcript_57275:359-1513(+)
ATGTCCGAGACCCCCTCGCCGCCATCTCCACCACCGTCAACGCCGCCGTTACCTCCACCACCATCGTCTCAACAATACTGGTGTTACAACTGCGACAAGCGAGTCGCAATCGAAACCCTACCGGATCAGCCTGACGTCATCTGCAACGAGTGCAAGTTCGGTTTCGTCGAGTCTATCCTTCCTGCTTCAATCTCCTCTCCACCGCCTCTTTATCCTCCTTCTCGAAGTTCCGATCACAGAGGCGGCCTTCTTCTCGGCGGTTCTGGCGGCGATGACACAACCCTAGGCAACCAGTTCCTCCAAGTCCTCCGTCTTCTCGCACAGGTGGCGCGTGAGGACGACGCTCCACCGCCTCCACCACCACCGCCTCCTCCTCGCCCTCTCAATCCGTCCGATCCTTCTCCCTCCGACGACGACTTTCTCCGCATCGAGATCGATGGTTGGGATAACGACCACGAGAACGACACCGATGACGTGGACCGAGAGAATGCTGACGTGGATGAGGATGAGGATGACGACGACCGTAGCGTGGAGATCGAAGGGGAATCTGATGACGATGACGATGACGCGGAGGGGAGAGAAGAGGATATCCGGAGACGGAGGCGAGACGTGCTCCGTCTCCGTCTCCGAGACTTCGCTACGCGTGCTCGTAGCGAAGGGAGGAATCGGATCCTCGATTGGGCGGAGATTCTGATGGGATTAGAAGACAATTCGATCGAATTCCGGTTCGAGATGCCGGAAACCGACAGGTACATTGGGAACCCCGGGGATTACGTGGACGCAGCCGAGTACGAGGCATTGTTGCAGAATCTGGCTGAGGCTGAGGGCAGGAGGGGCGCCCCACCGGCCTCGAAGACGGCCATCGAGAGTCTCAAGACGGTGGAGATCAAATCGGAGGAGGAGAGTTACGTTTGTGCTATCTGTAAGGATAATGTCAACGTTGGGGAGTTTGTTAAGGAGATGCCTTGTGGACATGGTTATCATGGTGATTGTATTGTGCCTTGGCTTGGGGCTAGGAACTCTTGCCCCGTTTGTCGGTTCGAGTTGCAGACCGATGATCCGGATTATGAGGAGGAGAGGAAGAAGCGATCTGGTGGGTCCTCCGGTGGTGGTGGCAGTGGGAACTCTTCGACTTCAGCTTCAGCTTCAGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57275.p1 GENE.R_Transcript_57275~~R_Transcript_57275.p1 ORF type:complete len:385 (+),score=50.89,zf-RING_2|PF13639.2|5e+03,zf-RING_2|PF13639.2|2.4e-11,zinc_ribbon_9|PF14369.2|2.5e-11,zinc_ribbon_9|PF14369.2|4.3e+03,zinc_ribbon_9|PF14369.2|1e+02,zinc_ribbon_9|PF14369.2|2.1e+03,zf-RING_11|PF17123.1|4.5e-08,zf-RING_11|PF17123.1|6.4e+03,zf-rbx1|PF12678.3|2.6e-06,zf-C3HC4_2|PF13923.2|4.4e+03,zf-C3HC4_2|PF13923.2|9.4e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|2.2e-06 R_Transcript_57275:359-1513(+)
MSETPSPPSPPPSTPPLPPPPSSQQYWCYNCDKRVAIETLPDQPDVICNECKFGFVESILPASISSPPPLYPPSRSSDHRGGLLLGGSGGDDTTLGNQFLQVLRLLAQVAREDDAPPPPPPPPPPRPLNPSDPSPSDDDFLRIEIDGWDNDHENDTDDVDRENADVDEDEDDDDRSVEIEGESDDDDDDAEGREEDIRRRRRDVLRLRLRDFATRARSEGRNRILDWAEILMGLEDNSIEFRFEMPETDRYIGNPGDYVDAAEYEALLQNLAEAEGRRGAPPASKTAIESLKTVEIKSEEESYVCAICKDNVNVGEFVKEMPCGHGYHGDCIVPWLGARNSCPVCRFELQTDDPDYEEERKKRSGGSSGGGGSGNSSTSASASV*

Click here to download the sequence:
Link to NCBI Protein BLAST