Transcript Information: R_Transcript_57324.p1


Annotated TAIR IDAT5G03800.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)EMB175, emb1899, EMB166
Annotation TypeOrtholog
Chromosome Positionchr5:1010894-1013584 | Reverse length=896
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1981810195853
Replicate 22.3562514911623
Replicate 33.0796836101494
Condition 2: 8 Hour
Replicate 13.3191950261821
Replicate 22.5590786996023
Replicate 34.4773972863621
Condition 3: 24 Hour
Replicate 13.8263012046174
Replicate 22.573113537234
Replicate 34.5720983123741


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57324.p1 GENE.R_Transcript_57324~~R_Transcript_57324.p1 ORF type:complete len:900 (+),score=154.26,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|5e-09,PPR_2|PF13041.2|33,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|8.3e+02,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|2.4e-08,PPR_2|PF13041.2|9e+02,PPR_2|PF13041.2|3.3e+03,PPR|PF01535.16|1.4,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|1e+04,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.0071,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|2.2,PPR|PF01535.16|0.00036,PPR|PF01535.16|5.2e-07,PPR|PF01535.16|38,PPR|PF01535.16|0.0064,PPR|PF01535.16|0.19,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|6e+02,PPR|PF01535.16|14,DYW_deaminase|PF14432.2|2.6e-33,PPR_1|PF12854.3|98,PPR_1|PF12854.3|5.6e-06,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|3.8,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|2.1e+03,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|3e+02,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1.4,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|33,PPR_3|PF13812.2|20,PPR_3|PF13812.2|35,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|9.4e+03 R_Transcript_57324:482-3181(+)
ATGGCCTCATCCTCAACTTTAACCTTTCACTTCTCTTCTCCATCTCACACTCTTCTCCAACCCCAACCTCTTCACTTCCCTCCTAAATTCTCACTCCCTTCTTCACTTTCTCTCTCCAAATTCAACCCCCACCATACCCAACTCTCATTCTCTGCTCAATTTCTTCAAAACCCTCAAATTTCTTCCATAAATAACCATACCCATTTGCCCATTTCAGCTTCTCAACCTGACCCTTACCCATTTTCAGATACCCAGTTTTTGTATAACAAGTGCCTTGAGTTGCTTCACTTATCTGTTCGTTATGATGATGTTGAACTAGCTAGAGCAGTTCATTCTTTAATTCTCAAGTTTGAAGAAGATAATTACTTATTTAATTCCTTGATTGCTTCTTATCTTTACCTGGGTTTGTTTTCTGATGCTTTTAATGTTTTTAGTGGACTTTCAAACCCTGATGTTGTGTCTTATACTACACTCATTTCTGGGTTTGCTAAAGTTGGGTATGAATTTGATGCTATAAAGCTTTTCTTTAGGATGAGGGATGAAGGTGTTGAACCAAATGAGTTTACTTTTGTTGCTTTTTTAAGTGCTTGTAGTAGAATTTGTGAGTTGAACCTAGGGTTTCAAGTTCATTGCTTGCTTGTCAAAACTGGATTTTTGTGGGGTACATATGTGTCAAATGCTCTTATGAGTTTGTATGTGAAATGTGGGTGTTTGGATTATGCACTCCAGGTGTTTGCTGAAATGCCTGAGAGAGATATTGTATCATGGAACACTGTTATCTCAGGTGTTGCTGGTGTGTGTATGTATGATAGAGTGTTTGGATTGTTCCGAGAGATGCAGAGAATTGATGGGTTTAGGGTTGATCAGTTTACTGTCTCTAGTATGTTGAATGCCTGTGCTGGGTGTTGTGCTGAAATACAGGGCAAGGAAATTCATGGTCATGCGCTAAAGGCTGGGTTTGAGGGTAATTTGAGCATCAATAACGCACTCATTAGCTTTTACACAAAGTGTGGGGGTGCTAAGAATGTGCAGGCTTTGTTTGAGAGAATGCCTACGAAGGATGTCATTTCTTGGACTGGTATGGTTACTGCTTACATGAAGTTTGGGATGGTGGAGCGAGCTGTCGAGACATTTAGCATGATGCCGGATAGAAATCCTGTCTCTTTCAATGCCCTTTTGGCTGGCCTTTGTCAAAATGGGGAGGGTTTAAAAGCTTTGTCTCTGTTTTACAGAATGATTAGTCATGGTGTTGAATTAACAGAGAGCACATTAACAAGTGCCATTACTGCTTGCAGCTTGCTTGCAGAAAAGAGTATTAGTGAGCAGATACACAGTTTCATTGTTAAGTGTGGGTTTGGGTCAAATGCTTGTATTGAAGCAGCATTACTTGATATGTGCACAAGGTGTGGGAGGATGGCAGATGCTCAAAAGATGTTCTTCAATAATCAGTATGACCATAATCTGTCGATAAATTGGACATCACTTATATGTGGTTATGCTCAAAATGTGCAGCCAGATGAAGCACTTGCTCTGTTCCAGTGGGGCCAAGTTGAAGAAGACATGGTACTTGATGCAGTTGTAGCATCTGTTGTACTTGGTGTATGCGGAACATTAGGGTTTCATGAGGTTGGTGAACAGATTCATTGCTATGCCCTGAAGTCAGGGTATCTTGATGATGTTGGGGTAGGCAACGCCATTGTCAGTATGTATTCCAAGTGTGGTTACATAGAAGATGCAACAAAAGTTTTCAATCTCTTGCCAGTACATGATGTAGTGTCATGGAATTGTTTGATATCTGGTCATATTCTTCAGAGGCAAGGTGATGATGCTTTGGCTCTATGGTCCAGGATGAAGGGAGAACTCATAAGGCCTGATTCCGTTACCCTTGTTCTGGTAATTTCTTCTTACAGGCATACCAACTCAAATATGCTTGATGATTGCAGGAGTTTGTTTTTCTCCATGAGGGAGACCTATGATATTGAGCCAACCTCGGATCATTATGCTTCCTTTGTTAGCGTTCTAGGTCATTGGGGCGCCCTTGAAGAGGCAGAGGATATAGCATCCAAGATTCCTTTTGAGCCAAAAACCTCTGTTTGGCGAGCTTTACTTAATAGCTGTCGAATCCATTTGGACTCAACAGTTGGGAAAATAGTAGCCAAGCGCATCTTAGCATTGCAGCCAGAAGATCCTTCTACCTATATACTCGTATCAAACTTGTTTTCTGCATCTGGTAGATGGCATTGCTCTGAGATGGTCAGGGAGGAAATGAGGCAGAAAGGGCTTCAAAAGCATCCAGCGCGTAGTTGGATAGTTCATCAAAACAAGGTTCATTCATTTTACACCAGAGATAGATCACATTCCCAATCAAAAGACATATATAGTGGGCTGGATATACTAATCTTAGAGTGCCGAAAAGCTGGATATTTGCCTGATACACGCTTTGTTCTTCATGAAGTAGAAGAGCACCAAAAGACTGACTTTTTGTTCTATCATAGTGCAAAATTAGCAGCTACATATGGGCTTTTGATGACCAAGACAGCCAAGCCTATTAGAGTTACAAAGAATGTTCTTCTATGTGGTGATTGCCATAACTTTTTCAAATACTTATCTAAAGTCACTAGACGGGAGATATGTGTAAGAGACACCTCAGGATTTCATAGCTTCTCTGATGGAAAATGTTCGTGTAACGATCATTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57324.p1 GENE.R_Transcript_57324~~R_Transcript_57324.p1 ORF type:complete len:900 (+),score=154.26,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|5e-09,PPR_2|PF13041.2|33,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|8.3e+02,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|2.4e-08,PPR_2|PF13041.2|9e+02,PPR_2|PF13041.2|3.3e+03,PPR|PF01535.16|1.4,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|1e+04,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.0071,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|2.2,PPR|PF01535.16|0.00036,PPR|PF01535.16|5.2e-07,PPR|PF01535.16|38,PPR|PF01535.16|0.0064,PPR|PF01535.16|0.19,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|6e+02,PPR|PF01535.16|14,DYW_deaminase|PF14432.2|2.6e-33,PPR_1|PF12854.3|98,PPR_1|PF12854.3|5.6e-06,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|3.8,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|2.1e+03,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|3e+02,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1.4,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|33,PPR_3|PF13812.2|20,PPR_3|PF13812.2|35,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|9.4e+03 R_Transcript_57324:482-3181(+)
MASSSTLTFHFSSPSHTLLQPQPLHFPPKFSLPSSLSLSKFNPHHTQLSFSAQFLQNPQISSINNHTHLPISASQPDPYPFSDTQFLYNKCLELLHLSVRYDDVELARAVHSLILKFEEDNYLFNSLIASYLYLGLFSDAFNVFSGLSNPDVVSYTTLISGFAKVGYEFDAIKLFFRMRDEGVEPNEFTFVAFLSACSRICELNLGFQVHCLLVKTGFLWGTYVSNALMSLYVKCGCLDYALQVFAEMPERDIVSWNTVISGVAGVCMYDRVFGLFREMQRIDGFRVDQFTVSSMLNACAGCCAEIQGKEIHGHALKAGFEGNLSINNALISFYTKCGGAKNVQALFERMPTKDVISWTGMVTAYMKFGMVERAVETFSMMPDRNPVSFNALLAGLCQNGEGLKALSLFYRMISHGVELTESTLTSAITACSLLAEKSISEQIHSFIVKCGFGSNACIEAALLDMCTRCGRMADAQKMFFNNQYDHNLSINWTSLICGYAQNVQPDEALALFQWGQVEEDMVLDAVVASVVLGVCGTLGFHEVGEQIHCYALKSGYLDDVGVGNAIVSMYSKCGYIEDATKVFNLLPVHDVVSWNCLISGHILQRQGDDALALWSRMKGELIRPDSVTLVLVISSYRHTNSNMLDDCRSLFFSMRETYDIEPTSDHYASFVSVLGHWGALEEAEDIASKIPFEPKTSVWRALLNSCRIHLDSTVGKIVAKRILALQPEDPSTYILVSNLFSASGRWHCSEMVREEMRQKGLQKHPARSWIVHQNKVHSFYTRDRSHSQSKDIYSGLDILILECRKAGYLPDTRFVLHEVEEHQKTDFLFYHSAKLAATYGLLMTKTAKPIRVTKNVLLCGDCHNFFKYLSKVTRREICVRDTSGFHSFSDGKCSCNDHW*

Click here to download the sequence:
Link to NCBI Protein BLAST