Transcript Information: R_Transcript_5741.p1


Annotated TAIR IDAT5G61140.2
Annotated Gene NameU5 small nuclear ribonucleoprotein helicase
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24589999-24603311 | Forward length=2157
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.1743999452596
Replicate 25.8929950571758
Replicate 37.7850105816041
Condition 2: 8 Hour
Replicate 17.4217299482104
Replicate 27.3860287513606
Replicate 310.700352800085
Condition 3: 24 Hour
Replicate 19.3803737407708
Replicate 27.2640232145577
Replicate 39.8207362318298


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5741.p1 GENE.R_Transcript_5741~~R_Transcript_5741.p1 ORF type:complete len:2095 (+),score=389.17,Sec63|PF02889.12|6.6e-100,Sec63|PF02889.12|2.3e-80,DEAD|PF00270.25|2.4e-26,DEAD|PF00270.25|2.9e+03,DEAD|PF00270.25|5.6e-22,ResIII|PF04851.11|2.2e-13,ResIII|PF04851.11|4.1e-10,Helicase_C|PF00271.27|4.7e-07,Helicase_C|PF00271.27|1.2e-08,AAA_22|PF13401.2|0.018,AAA_22|PF13401.2|0.48 R_Transcript_5741:119-6403(+)
ATGCTGCTTCAACTCCCTCGCTTGACGAACTCTCTCAGAGACCCCTTCGACATCGATCGCGCTTACCTTCACCGCAAAACTCTCCTCCAAAACCTCATTTCTCCGAGTTCTGCGAATTCTCTCGATGAATCGGAACTAGCGCGAAAGATAGTGTATAAGTGGGATGAAGCTTCTCCTGAATTGCGACAGGCATACAAACAGTTTATCAGTGCGGTTGTTGAGTTCGTAGATAGGGAAGTGGCGTCGGAGGAGTTCCGTGAGGTGGCATGGGCTGCATATCGTCTGTTTAGTGACCTGGAAGTGGAGGAGGATCACAAAAGAAGGATTGTAGAGAAAAAGTCGGAATTTCAAAAATTATTGGGCCATGCTGTTTCCGATGGTAGCCTACAGAAAGTCGTACATTTTGCACAGACTCTGTCTAGCCTGCAACCTAAAAATAATACAGCTTCTCTGAACTCAGATGAGAATTGTATTGACAATGATGTAGAATTTGGATCCAACTTTGATTTTAAACCTCCTTCACGGTTTTTAGTAGATACTTTGATTGAAGATGAGGACATTCTGGGACCAGAAGGCTTGGCTCCAACAACTTCAGTGCACAACGACTGGCCTGCAACTGATGGTGTTGACAATCTTTTTTCTGCTGGCGGGGTTTCATATGACTTAAAATGGTTGAGGGAATCATGTGACCAAATTGTGCAGGGAAGTTCCTCACAGCTTTCACGAGATGAACTAGCCATGGCAATTTGTCAAGTTCTTGATTCAAACAAACCTGGTGAAGAGATTGCTGGTGACTTATTGGACTTGGTTGGGGATAGTGCTTTTGATACTGTTCAAGAAATTATTTATCACAGAAAGGAACTCGTTGAAGTAATTCGTCATGGATTACTAGTACTACGATCTGATAAGTCATCCACCGGTGCTCAGCCTCGTATGCCTAGCTATGGAACTCAGGTCACAGTACAAACTGAATCTGAACGTCAAATGGATAAACTTAGACGCAAAGAAGAAAAACGGCATAAACGCGGAGTGGAGCATGGCATTGAGGATGAATTTTCGAGTTCAAGTTTTTCTTCATTACTTGAAGCAAGTGAGAGGAAAAATCTTTTTGATGATGTGATTGGAAGTGGACCAGGGCCCCAATCTTTAGGAGTTTCTGCGCTTCCACAAGGAACTGTTAGGAAGCATTTCAAGGGCTATGAAGAAGTCATGATCCCTCCAACACCAACAGCTCCAATGAAGCCTGGGGAGAAACTGATAGCGATCAAAGAATTGGATGACTTTGCGCAAGCTGCTTTTCATGGCTACAAATCTCTCAATCGTATCCAAAGCAGGATATTTCAGACAGTATACCACACTAATGAGAATATACTGGTATGTGCACCAACAGGAGCTGGCAAAACAAACATTGCTATGATTTCTATCCTGCATGAGATTGGGCAGCATTTTAAGGATGGGTACCTGCACAAAGATGAGTTTAAGATAGTTTATGTTGCTCCAATGAAGGCATTAGCTTCTGAAGTCACATCGACATTTAGCCATCGTTTGTCTCCGTTAAATATGACAGTTAAGGAGCTTACTGGTGACATGCAACTGTCTAAGAATGAACTTGAAGAAACTCAGATGATAGTGACTACACCTGAAAAATGGGATGTCATCACACGCAAGAGCAGTGACATGTCACTTTCAATGCTCGTCAAGCTTTTAATCATTGATGAAGTACACCTTCTAAATGATGATAGAGGACCTGTCATAGAAGCATTAGTTGCCCGTACACTTCGTCAGGTTGAGTCAACCCAGTCTATGATTCGCATTGTGGGCCTCTCGGCCACCTTACCCAACTACCTGGAGGTGGCACAATTTTTGAGGGTGAATCCAGAAACAGGGCTCTTTTTCTTTGATTCGAGCTATCGCCCAGTGCCTCTTGCCCAACAGTACATTGGCATCAGTGAAAAGAACTTCTTGGCACGTACTGAGTTGCTAAACAAGATTTGCTACAACAAGGTAGTTGATTCACTGAGGCAAGGACACCAAGCAATGGTATTTGTTCATTCACGAAAAGATACAGGGAAAACTGCAGAACGACTGGTTGAGCTTGCCCGTGAGGACAACAATTTGGAGCTTTTTGAGAATGAGACTCATCCTCAATTTCAGCTCATGAAGAAGGAGGTAATGAAGTCGAGAAACAAAGAACTGGTTGGACTTTTTGATCATGGGTTCGGTATTCATCATGCTGGAATGTTACGTGCTGATAGGGGTCTCACTGAGCGACTTTTCTCCAATGGACTCTTAAAGGTACTTGTTTGCACAGCAACCTTAGCATGGGGGGTAAACTTACCTGCTCACACTGTCGTGATCAAGGGTACTCAAATATATGATCCAAAGGCTGGTGGCTGGCGGGACCTAGGCATGCTTGATGTTATGCAGATCTTTGGACGTGCAGGAAGGCCTCAGTTTGACCAAAGTGGTGAAGGAATTATCATCACATCTCATGACAAATTAGCTCATTACCTGCGGCTACTCACTAGCCAACTCCCAATTGAAAGTCAGTTCATTAGCTCCTTGAAAGATAATTTGAATGCCGAGGTAGCCTTGGGGACCGTAACAAATGTGAAAGAAGCTTGTGCATGGCTTGGTTATACATATCTATTCATAAGGATGAAGATGAACCCTTTGGCATATGGTATTGGCTGGGATGAGGTAGTTGCAGACCCCTCTTTAGGTTTGAAACAAAGAGCTTTTATAACAGATGCAGCTCGTGCACTTGACAAAGCAAAAATGATGCGTTTTGATGAGAAAAGTGGCAACTTTTATTGTACGGAACTCGGTCGCATTGCCAGCCATTTCTATATACAGTATTCCAGTGTCGAAACGTACAATGAAATGTTAAAACGCCATATGAGTGACAGTGATGTTATTGATATGGTTGCACATTCTTCGGAGTTTGAAAATATTGTTGTTCGAGAAGAGGAGCAAATGGAGCTAGAAGCTTTAGCACGTGAATGTCCACTTGAGGTTAAAGGTGGTCCTTCTAGTAAATATGGAAAAATTTCAATTCTCATTCAGTTGTACATATCACGAGGATCCATAGAAGCCTTTTCCTTGGTTTCTGATGCGGCATATATAAGTGCAAGCTTGGCTCGTATCGTGCGTGCTTTATTTGAGATATGTTTGCGCCGGGGGTGGTCTGAGATGACTTCCTTCATGTTAGAATATTGCAAGGCTGTTGACCGGCAAATATGGCCCTATCAACATCCACTCAGGCAATTTGACAAAGATGTCTCCTTAGAGATTTTGAGGAAGCTCGAAGATCGTGGAGCTGATCTAGACCGTCTATATGATATGGAGGAAAAAGACATTGGAGCACTAATACGTTATGTCCCTGGAGGAAGGACAGTGAAGCAATATTTGGGCTATTTCCCAATGGTTCAGTTGTCTGCTACTGTGAGTCCAATCACCAGAACTGTTTTGAAGGTTGATTTGCTTATTACCCCTGATTTCATATGGAAGGATCGATTCCATGGTGCTGCTCAGCGATGGTGGATCCTTGTGGAGGATTCTGAAAATGACCACATATATCACTCAGAACTTTTCACTCTTACAAAGAGGGCGTCAAAAGGGGAGCCTCAAAAGCTTTCCTTTACTGTGCCCATATTTGAACCACATCCGCCACAGTACTACATTCGTGCTGTTTCTGATTCTTGGCTACAGGCAGAATCTTTTTACACCATTACCCTTCACAACCTTGCACTACCTGAGGTGCACAGTTCGCATACAGAATTGTTGGACTTAAAACCTCTACCAATAACTTCACTTGGCAACAATACTTATGAATCCCTGTACAAGTTTTCACACTTCAATCCTATTCAGACACAGGCTTTTCATATCTTGTATCACACGGACAACAATGTTCTCTTGGGAGCTCCAACTGGAAGTGGGAAAACCATATCTGCAGAGCTTGCAATGTTCCGTCTTTTCAATACCCAGCCTGACATGAAGGTTATTTATATAGCACCACTGAAGGCGCTGGTTCGAGAAAGAATGAATGACTGGAGAAGGCGTCTTGTGAAACAGCTTGGGAAACAGATGGTTGAAATGACTGGTGATTACACTCCAGATTTGATGGCCCTTCTGTCTGCAGATATAATAATTTCAACTCCTGAGAAGTGGGATGGGATCAGCCGTAACTGGCATACTCGAAGCTATGTAAAAAAGGTAGGGCTTATGATATTGGATGAGGTTCACCTACTTGGTGCTGATCGGGGTCCTATTCTTGAGGTTATTGTTTCACGGATGAGATATATATCATCACAGACAGAACGCTCAGTGCGGTTTGTGGGTCTGTCAACAGCTTTAGCAAATGCAGGGGATTTGGCTGACTGGTTGGGGGTGGGGGAGACGGGACTCTATAATTTCAAACCTAGCGTTCGGCCTGTACCACTTGAAGTGCACATTCAGGGCTACCCAGGAAAGTTCTATTGTCCAAGGATGAACAGCATGAATAAACCTGCATATGCTGCCATCTGTAGCCATTCACCCACCAAACCAGTTCTTGTGTTTGTCTCATCACGTCGACAGACAAGACTTACTGCTTTGGACCTGATTCAGTTTGCAGCATCTGATGAGCATCCAAGAAAGTTCTTGAATATTTCGGAAGAGGCACTGCAGATGCTTCTTTCCCAGATTGCAGATCAGAACCTGAGACACACCTTGCAATTTGGTATTGGCCTTCACCATGCTGGATTAAATGACAAGGATCGAACTGTAGTTGAAGAACTGTTTGGAAACAACAAAATTCAGGTATTGGTGTCAACTAGCACATTGGCTTGGGGTGTGAACCTTCCTGCGCATCTGGTTATCATCAAGGGAACAGAATACTACGATGGGAAATTGAAAAGATATGTTGATTTTCCTATCACAGATATCTTGCAGATGATGGGTCGTGCAGGAAGACCACAATATGACCAGCATGGGAAAGCTGTCATTCTGGTTCATGAACCCAAAAAAAGTTTCTACAAAAAGTTCCTTTATGAACCCTTTCCAGTTGAAAGTAGTCTGAGGGATCAGTTGCATGATCACTTCAATGCAGAGATTGTTTCCGGGACAATTTGCCATAAAGAGGATGCAATACACTATCTGACCTGGACATATCTTTACCGAAGACTTATGGTTAATCCAGCATACTATGGTTTAGAAGATACCAGTCCAGGGTTCATAAGTTCATACTTGTCAAGGTTGGTGCAAAGTACATTTGAGGACTTAGAAGACAGTGGATGCATCAAAATAAAAGAGGACAGAGTAGAACCTATGATGCTGGGTTCAATTGCTTCTCAGTATTACCTTAGTTATTTGACTGTATCAATGTTTGGCTCAAATCTTGGTCCAGACCTTTCCCTTGAAGTTCTTTTGCACATACTGTCTGCTTCTTCAGAGTACAATGAGCTTCCAGTGCGGCATAATGAGGAGAATTACAATGGAAAACTTGCCGAGAAAGTTCCATATATGGTAGACAAGAACAGACTTGATGACCCACATGTTAAAGCAAATTTGCTTTTTCAGGCACACTTTTCTCAGGTGGAGATGCCAATCAGCGACTATATAACAGACCTAAAGTCTGTTTTAGATCAAAGTATACGTATAATCCAGGCCATGATAGATATATGTGCTAATAGTGGATGGCTGTCGAGCACGATTATGTGTATGCATCTCTTACAAATGGTTATGCAGGGCCTATGGTTCAACAAGGATTCTGCTCTACAGATGTTGCCATGCATGACTGAGGATCTTGTCGGGACACTGAGGAAATGGGGTATATCAAATGTACAGCAACTTGTCGATTTATCTAGGGCAAAGTTGCAAGATTTGCTTGGAAGTTTCCCAGTTTCTAATTTATCTCAGGAGGTGCAAAGATTCCCACGTATACAGATGAAACTGAGGCTCCAAAGCAAGGATGAGGGCTCTGCAAGTTCATGTTCTCTTAATGTTAGGTTGGAGATTGTAAACAACAAGCGGAAAACATCAAGAGCATTCACCCCTCGGTTCCCCAAGGTTAAAGATGAAGCATGGTGGCTGGTTCTCGGTAATACTCTCACCTCTGAGCTGTATGCTCTGAAAAGAGTTACATTTACTAATCATCTGGTCACGCGTATGGACTTGCCATCAACTTCAGGAATAAGCCAGGGATTGAAGCTCATCTTGGTCTCAGATTGTTATCTTGGTTATGAAATGGAGTATTCCCTTGATGAACTCCTTAAGAATCGTCCACAACAAGTATCCACCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5741.p1 GENE.R_Transcript_5741~~R_Transcript_5741.p1 ORF type:complete len:2095 (+),score=389.17,Sec63|PF02889.12|6.6e-100,Sec63|PF02889.12|2.3e-80,DEAD|PF00270.25|2.4e-26,DEAD|PF00270.25|2.9e+03,DEAD|PF00270.25|5.6e-22,ResIII|PF04851.11|2.2e-13,ResIII|PF04851.11|4.1e-10,Helicase_C|PF00271.27|4.7e-07,Helicase_C|PF00271.27|1.2e-08,AAA_22|PF13401.2|0.018,AAA_22|PF13401.2|0.48 R_Transcript_5741:119-6403(+)
MLLQLPRLTNSLRDPFDIDRAYLHRKTLLQNLISPSSANSLDESELARKIVYKWDEASPELRQAYKQFISAVVEFVDREVASEEFREVAWAAYRLFSDLEVEEDHKRRIVEKKSEFQKLLGHAVSDGSLQKVVHFAQTLSSLQPKNNTASLNSDENCIDNDVEFGSNFDFKPPSRFLVDTLIEDEDILGPEGLAPTTSVHNDWPATDGVDNLFSAGGVSYDLKWLRESCDQIVQGSSSQLSRDELAMAICQVLDSNKPGEEIAGDLLDLVGDSAFDTVQEIIYHRKELVEVIRHGLLVLRSDKSSTGAQPRMPSYGTQVTVQTESERQMDKLRRKEEKRHKRGVEHGIEDEFSSSSFSSLLEASERKNLFDDVIGSGPGPQSLGVSALPQGTVRKHFKGYEEVMIPPTPTAPMKPGEKLIAIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDEFKIVYVAPMKALASEVTSTFSHRLSPLNMTVKELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISEKNFLARTELLNKICYNKVVDSLRQGHQAMVFVHSRKDTGKTAERLVELAREDNNLELFENETHPQFQLMKKEVMKSRNKELVGLFDHGFGIHHAGMLRADRGLTERLFSNGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDQSGEGIIITSHDKLAHYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEVVADPSLGLKQRAFITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLKRHMSDSDVIDMVAHSSEFENIVVREEEQMELEALARECPLEVKGGPSSKYGKISILIQLYISRGSIEAFSLVSDAAYISASLARIVRALFEICLRRGWSEMTSFMLEYCKAVDRQIWPYQHPLRQFDKDVSLEILRKLEDRGADLDRLYDMEEKDIGALIRYVPGGRTVKQYLGYFPMVQLSATVSPITRTVLKVDLLITPDFIWKDRFHGAAQRWWILVEDSENDHIYHSELFTLTKRASKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAESFYTITLHNLALPEVHSSHTELLDLKPLPITSLGNNTYESLYKFSHFNPIQTQAFHILYHTDNNVLLGAPTGSGKTISAELAMFRLFNTQPDMKVIYIAPLKALVRERMNDWRRRLVKQLGKQMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVKKVGLMILDEVHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLGVGETGLYNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICSHSPTKPVLVFVSSRRQTRLTALDLIQFAASDEHPRKFLNISEEALQMLLSQIADQNLRHTLQFGIGLHHAGLNDKDRTVVEELFGNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYYDGKLKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTICHKEDAIHYLTWTYLYRRLMVNPAYYGLEDTSPGFISSYLSRLVQSTFEDLEDSGCIKIKEDRVEPMMLGSIASQYYLSYLTVSMFGSNLGPDLSLEVLLHILSASSEYNELPVRHNEENYNGKLAEKVPYMVDKNRLDDPHVKANLLFQAHFSQVEMPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSTIMCMHLLQMVMQGLWFNKDSALQMLPCMTEDLVGTLRKWGISNVQQLVDLSRAKLQDLLGSFPVSNLSQEVQRFPRIQMKLRLQSKDEGSASSCSLNVRLEIVNNKRKTSRAFTPRFPKVKDEAWWLVLGNTLTSELYALKRVTFTNHLVTRMDLPSTSGISQGLKLILVSDCYLGYEMEYSLDELLKNRPQQVSTK*

Click here to download the sequence:
Link to NCBI Protein BLAST