Transcript Information: R_Transcript_57500.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value6.4E-59
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6238631372408
Replicate 22.886991307241
Replicate 32.0043395396633
Condition 2: 8 Hour
Replicate 13.9789530539273
Replicate 22.9348657416556
Replicate 33.9706648232096
Condition 3: 24 Hour
Replicate 14.1611025600214
Replicate 25.100278618446
Replicate 33.2831557030346


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57500.p1 GENE.R_Transcript_57500~~R_Transcript_57500.p1 ORF type:internal len:160 (+),score=58.76,Nefa_Nip30_N|PF10187.5|2.2e-16,Nefa_Nip30_N|PF10187.5|5.4e+03 R_Transcript_57500:1-477(+)
GAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGAAAGATGCTGAGTTCAACGAAAGATTCAAGCATCGACCTCCCAAGGCTTTGGATGAGGATGAGACTGAATTCCTAGAAAAATTGGAGACGTCAAGGAAAGAATATGAACAGCATATTGCAGATGAAGAAACTCAAGAACTAAGGAGATTCCAGGCAGCAGTGGCGGCACAGTCTATGGTAATGCAAGAGGTGAAAGAAACTCCTGTTTCTGATGTTCAGCAGGAGAAGAGGACAGTGGGAAAGAAGAATAAGCCTCTTGAACCATTGGGTATGATTATAAAAGTGAAGCCATCAGCCAAGAAAACTAAAGTGGATCCATCACCAGTGCAGCCGTCTGGAGCTGTGGTAAATCATGCTGTGGAGACTCAACAATGTTCAAGCCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57500.p1 GENE.R_Transcript_57500~~R_Transcript_57500.p1 ORF type:internal len:160 (+),score=58.76,Nefa_Nip30_N|PF10187.5|2.2e-16,Nefa_Nip30_N|PF10187.5|5.4e+03 R_Transcript_57500:1-477(+)
EAKRTRGERVEDGTAQRDRPLYEILQENKDKKDAEFNERFKHRPPKALDEDETEFLEKLETSRKEYEQHIADEETQELRRFQAAVAAQSMVMQEVKETPVSDVQQEKRTVGKKNKPLEPLGMIIKVKPSAKKTKVDPSPVQPSGAVVNHAVETQQCSSP

Click here to download the sequence:
Link to NCBI Protein BLAST