Transcript Information: R_Transcript_57534.p1


Annotated TAIR IDAT3G54670.3
Annotated Gene NameStructural maintenance of chromosomes (SMC) family protein
Annotated Gene Symbol(s)TTN8
Annotation TypeOrtholog
Chromosome Positionchr3:20235818-20243701 | Forward length=1239
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.073316154061
Replicate 210.696554032954
Replicate 313.853211890524
Condition 2: 8 Hour
Replicate 112.675509381072
Replicate 213.578218307836
Replicate 316.24248477042
Condition 3: 24 Hour
Replicate 115.317780993341
Replicate 211.888455079884
Replicate 315.341176744391


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57534.p1 GENE.R_Transcript_57534~~R_Transcript_57534.p1 ORF type:complete len:1217 (+),score=330.76,SMC_N|PF02463.15|9.6e-48,SMC_hinge|PF06470.9|2.7e-23,AAA_23|PF13476.2|2.1e-16,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|3.8e+03,AAA_21|PF13304.2|7.3e-08,AAA_21|PF13304.2|1.3e+03,AAA_21|PF13304.2|52,AAA_21|PF13304.2|2.1e+03,AAA_21|PF13304.2|0.00018,AAA_29|PF13555.2|8.2e-08,AAA_29|PF13555.2|1.7e+03 R_Transcript_57534:242-3892(+)
ATGCCATCCCTAACATCACCAGGCAAAATCCACCGCCTGGAACTGGAGAACTTCAAATCCTACAAAGGCCACCAAGTAATCGGCCCATTCTATGACTTCACCGCCATTATCGGTCCTAATGGTGCCGGGAAGTCGAACCTCATGGACGCCATCAGTTTCGTTCTCGGCGTCCGTACTGGCCAGCTCCGTGGGGCCCAGCTTAAGGACCTCATTTACGCTTACGACGACCGTGACCGCGAGCAGCGCGGTCGCCGTGCTTATGTAAAGCTCGTCTACTCTCTCTCCTCTGGTACTGAGATTCACTTCACTCGTACTATCACTGGTGCTGGTGGTAGTGAGTATAGGATTGATGGTAGGGTTGTTAATTGGGATCAGTATAATGACACGTTAAGGGAGCTTGGTATTCTTGTCAAAGCTCGCAATTTCCTTGTTTTTCAGGGAGATGTTGAGTCAATCGCATCAAAGAATCCCAAAGAACTCACAGCACTTCTCGAGCAGATTTCTGGTTCTGAGGAGCACAAGAAGGACTATGAGGATTTGGAAGAGCAGAAGGCCAGGGCAGAAGAAAAATCTGCTCTTGTTTATCAAAGGAAGAAAACTATAGTTGGGGAGAGAAGGCAGAAAAAGGAACAAAAGGAAGAAGCTGAGAAACATCTTCGCTTGCAAGAAAAATTGAAATCTTTGAAGAAGGAACACTACCTGTGGCAGTTATACAACATAGAAAAGGATATAAACAAGACAACTGAGGAACTTGAAGCTGAGAAGAAGAGCCGACAAGACCTTGTTCAAGAACAAAATGGTTATGAGCATGAAAAACGTGAAAAGGACAAGGAGCTTGCAAAATATCAGAAAGATTTAAATAGACTGGACCAGAAGATTACGGAAAAAACTAGTAGACTGGATAAGGATAATCCTGAAATTCTGAAGTTGAGCAAAGAAATGTCACGTATAAAATCGAAGATCAAGAGTTCTCAAAAGGAGCTTGAAAAAAAGAGACAGGAAGAGCTGAAGCATTCTGGAAAAATAGAAAAGCTCAAGGAGGACTTGTCAAATCTCAAACAAAGGCTAAAAGAGATGGAAAAAAATGAACCCGATGCCGGGGGAAAGATCCAATTAGCAGAAAATGAGTTGCAAGAGTACTACCGGGTTAAGGAGGAAGCAGGGAGGAGAACCGTGAAGCTGAGAGATGAAAAGGAGGTTCTGGATAGGCAACAGAAGACTGATATTGAGGCTCAAAAGAATTTAGAAGCGAATCTTCAGCAGTTAAATAGCAGGTTGGAGGAACTGATTTCGCAAGAGAAGAAAATGAAGCAAAAATTGGAGACTGATCGAGAAGACTCAAAGAAACATGAGGAAGAGATGAAACGCTTGAAAAAGGAACGAGAGGAGATGCGCAACAAAAGTCAAGAGTCAAAGAATAAATATGAATCTTTGACAGCAAAAATAGCTGAATTAGAAAATCAATTGCGTGAATTGAAGGCTGAAAAGCATGAAAATGAGAGGGATATTAAGCTGTCTCAAACAGTTGATACGCTTAAGCGTCTTTTCCCCGGTGTCCATGGTCGAATGACAGAACTTTGTCGGCCTACACAGAAGAAATATAACTTGTCTGTTACTGTAGCTATGGGCAAATTCATGGATGCAGTGGTAGTTCAGGATGAGCATACTGGAAAGGAATGCATCAAGTATCTGAAGGAGCAAAGGCTTCCGCCCCAGACTTTCATACCTCTTCAGTCGATACGTGTGAAGCCAGTTATTGAGAGATTGCGAACATTAGGTGGTACTGCAAAGCTGGTCTATGATGTAATACAGTTTGACCCAGTGTTGGAGAAGGCAATTTTGTTTGCTGTTGGGAATACATTAGTCTGTGACAATCTTGATGAAGCCAAGGTTCTAAGTTGGACAGGGGAGAGGTTCAAAGTTGTTACAACTGATGGAATACTTCTCACAAAAGCTGGCACTATGACCGGTGGCACAACTGGTGGAATGGAGGCAAGGTCAAACAAATGGGATGCCAAGAAAATTGAAGGGCTTAAGAAGAGGAAAGAACAGCTTGAATCGGAGCTGGAGGCTATCGGATCCCCTAGGGAGATGCAATTAAGAGAGACAGAGTTATCAGTAAAAATTAGTGGCTTGGAAAAGAAGATGAAGTATGCAGAGATTGCAGAGAAAAGTATTCGGGACAAGCTTTTGAAATTGGAGAAGGAAAAGAAGACTATTGATCAAGAGATTAAGAGGATTGAGCCTGAGAATGCAAAGTTAGGTGCTAACATCAGGAAGAGGGCTGAGGAAATCAAGAAGATAGATGATCGGATAAACAAAGAAGTTGATCGCATCTACAAAGACTTCAGCAAAGCTGTTGGTGTTGACATCCGTGCATATGAGGAGACCCAGCTTACTGCTGATGCAGAGGTGTTTGAGAGAAAGGTTACTTTGCGTAATCAAATATCGAAGCTGAAATATCAGTTGGAGTATGAGGAGAACCAGGATTTCAAATCACAAATTGAGCAGATTGAGTCCTCCCTAAGTGCATTAGCAAGCGACCTCAATAAAATTGAAGAACGGGAAGTTGAAGCTAAGTTAGAATTGGAGAGTATCACGACTGAGGTTGGTCAAATGAAAGATGAACGTAAAGGGTTGAAGTCCAGGTTGGAAGAATGTGAACATGACAAGCATGAAATAATGAAGAAGATCTCCAGTAGTATGACAAACTTAGATAAGTTGAATCGTCAAATAAATGCAAAGAAAATACAAATTGAAAATCTTGCATCACGGAGGCAGGAGATAATAGAGCAGTGTGATTTAGAACAGATAACCCTGCCAATTGTTTCGGACTCAATGGAAGTTGATTCTGGTGAAGGTCCGAGTTATGATTTTAGTCAGCTGGACAGATCACTTCAAAAGGATATGAGGCCATCTGAACGTGAAAAGCAGGAAGCTGATTTCAGACATAAGATGGATGCTCTTATATCAGATATTGAAAGAACAGCTCCTAACCTCAAGGCTCTTGACCAGTATGAGGCTCTAAAAAAAAAGGAAGATCTTGTAAGTAAGGAGTTTGATGCTGCTAGAAAAGAGGAGAAAGAGATTGCAGACAAATTCAATGCAGTCAGGGAATTAAGATACAAGAAGTTCATGGATGCGTTCAACCATATATCTGGTAACATCGATAAGATCTACAAACAGCTGACTAAGAGTAACACGCACCCCCTCGGTGGGACCGCATATTTGAATCTGGAAAATGAAGATGAACCATTCTTATATGGCATAAAGTACACAGCTATGCCTCCAACAAAACGGTTTCGTGATATGGAACAGCTCTCTGGTGGTGAAAAGACTGTTGCTGCTCTGGCACTGCTTTTCTCTATACACAGCTTTAAGCCATCACCATTCTTCATTTTGGATGAAGTTGATGCTGCTTTAGATAACTTAAACGTTGCTAAAGTAGCAGGGTTCATCCATTCAAAATCATGTGGAGCTGCTAGACATAATGAGGATGCTGAAGGCGGCTGTGGGTTCCAAAGCATTGTAATCTCACTCAAGGATAGCTTTTATGACAAGGCTGAAGCATTAGTTGGAGTTTACAGGGATTCTGAGCGAAGCTGCTCAAGCACGTTGACATTTGACCTGACAAAGTATCGGGAGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57534.p1 GENE.R_Transcript_57534~~R_Transcript_57534.p1 ORF type:complete len:1217 (+),score=330.76,SMC_N|PF02463.15|9.6e-48,SMC_hinge|PF06470.9|2.7e-23,AAA_23|PF13476.2|2.1e-16,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|3.8e+03,AAA_21|PF13304.2|7.3e-08,AAA_21|PF13304.2|1.3e+03,AAA_21|PF13304.2|52,AAA_21|PF13304.2|2.1e+03,AAA_21|PF13304.2|0.00018,AAA_29|PF13555.2|8.2e-08,AAA_29|PF13555.2|1.7e+03 R_Transcript_57534:242-3892(+)
MPSLTSPGKIHRLELENFKSYKGHQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDRDREQRGRRAYVKLVYSLSSGTEIHFTRTITGAGGSEYRIDGRVVNWDQYNDTLRELGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSEEHKKDYEDLEEQKARAEEKSALVYQRKKTIVGERRQKKEQKEEAEKHLRLQEKLKSLKKEHYLWQLYNIEKDINKTTEELEAEKKSRQDLVQEQNGYEHEKREKDKELAKYQKDLNRLDQKITEKTSRLDKDNPEILKLSKEMSRIKSKIKSSQKELEKKRQEELKHSGKIEKLKEDLSNLKQRLKEMEKNEPDAGGKIQLAENELQEYYRVKEEAGRRTVKLRDEKEVLDRQQKTDIEAQKNLEANLQQLNSRLEELISQEKKMKQKLETDREDSKKHEEEMKRLKKEREEMRNKSQESKNKYESLTAKIAELENQLRELKAEKHENERDIKLSQTVDTLKRLFPGVHGRMTELCRPTQKKYNLSVTVAMGKFMDAVVVQDEHTGKECIKYLKEQRLPPQTFIPLQSIRVKPVIERLRTLGGTAKLVYDVIQFDPVLEKAILFAVGNTLVCDNLDEAKVLSWTGERFKVVTTDGILLTKAGTMTGGTTGGMEARSNKWDAKKIEGLKKRKEQLESELEAIGSPREMQLRETELSVKISGLEKKMKYAEIAEKSIRDKLLKLEKEKKTIDQEIKRIEPENAKLGANIRKRAEEIKKIDDRINKEVDRIYKDFSKAVGVDIRAYEETQLTADAEVFERKVTLRNQISKLKYQLEYEENQDFKSQIEQIESSLSALASDLNKIEEREVEAKLELESITTEVGQMKDERKGLKSRLEECEHDKHEIMKKISSSMTNLDKLNRQINAKKIQIENLASRRQEIIEQCDLEQITLPIVSDSMEVDSGEGPSYDFSQLDRSLQKDMRPSEREKQEADFRHKMDALISDIERTAPNLKALDQYEALKKKEDLVSKEFDAARKEEKEIADKFNAVRELRYKKFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLYGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFKPSPFFILDEVDAALDNLNVAKVAGFIHSKSCGAARHNEDAEGGCGFQSIVISLKDSFYDKAEALVGVYRDSERSCSSTLTFDLTKYRES*

Click here to download the sequence:
Link to NCBI Protein BLAST