Transcript Information: R_Transcript_57538.p1


Annotated TAIR IDAT5G27720.1
Annotated Gene NameSmall nuclear ribonucleoprotein family protein
Annotated Gene Symbol(s)emb1644
Annotation TypeOrtholog
Chromosome Positionchr5:9815904-9817304 | Forward length=129
E-Value1.1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4370521992779
Replicate 22.9781986406097
Replicate 31.6245913188761
Condition 2: 8 Hour
Replicate 12.9521964830012
Replicate 22.5374050316239
Replicate 32.9609010231837
Condition 3: 24 Hour
Replicate 11.1397492949924
Replicate 23.597666343853
Replicate 31.7075514294743


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57538.p1 GENE.R_Transcript_57538~~R_Transcript_57538.p1 ORF type:3prime_partial len:141 (+),score=12.35,LSM|PF01423.18|5.3e-17,LSM|PF01423.18|3e+03 R_Transcript_57538:299-718(+)
ATGCTTCCTTTATCACTACTCAAGACTGCACAAGGCCACCCTATGTTGGTGGAATTGAAGAATGGGGAGACTTACAATGGACATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGTGAAGTCATCTGTACCTCTAAGGATGGTGACAGGTTTTGGAGGATGCCCGAGTGTTATATTCGCGGTAACACAATTAAGTATCTGCGAGTGCCTGACGAGGTCATTGATAAAGTTCAGGAGGAGACCAAGAGCCGTTCAGATCGAAAGCCTCCTGGGGTTGGTCGTGGAAGAGGAAGAGGTAGAGAAGATGGTCCTGGGCGACAGCCAAAAGTAGGGGTGAGCAGAAAAACCCGAAAACTGGGTAACCGCTTTTTTTATCCGGATCCGATTTTTAAAAATCCGAAAATACGGTTACCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57538.p1 GENE.R_Transcript_57538~~R_Transcript_57538.p1 ORF type:3prime_partial len:141 (+),score=12.35,LSM|PF01423.18|5.3e-17,LSM|PF01423.18|3e+03 R_Transcript_57538:299-718(+)
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGPGRQPKVGVSRKTRKLGNRFFYPDPIFKNPKIRLP

Click here to download the sequence:
Link to NCBI Protein BLAST