Transcript Information: R_Transcript_57857.p1


Annotated TAIR IDAT5G57250.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23195609-23198524 | Reverse length=971
E-Value8.9E-114
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.1124234143977
Replicate 23.6852628906205
Replicate 36.2424827629238
Condition 2: 8 Hour
Replicate 15.3721874595573
Replicate 25.5256682609858
Replicate 39.725574281593
Condition 3: 24 Hour
Replicate 17.9000306626511
Replicate 26.4179275293597
Replicate 37.1274049904215


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57857.p1 GENE.R_Transcript_57857~~R_Transcript_57857.p1 ORF type:complete len:433 (+),score=89.89,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|6.7e-14,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|0.062,PPR_2|PF13041.2|1.3e+03,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.4e-11,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|3.4e+02,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0019,PPR|PF01535.16|1e-06,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|5.9e-08,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.00057,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.8e+03,PPR_3|PF13812.2|88,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|4.6e-05,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.4 R_Transcript_57857:379-1677(+)
ATGGCAAAAAGGGCAGGCCAGTGCTATTACAAAATTTTGCAAGATTTCATCAGGGACTATGATGATGGCAAAATCCAGCCTATATTGACCACAATTATAAAGAGATATGGTTTAACTAAACCTACTCTGGGCAAGATGCTGGTGCATTACTTGTGTATGGAGACTAGTGTGGATGGTGCAATTGGCCTTATTAATGAGTTGAATAGAAACAATTTAAAGGTGAATTTTCCTGTTGATGTCATTGGGATGCTTACAGAACAGGGCAGATCTTTGGATGTGTATAAACTTGTGATGGGTGTACCAAATGATATTCCTACCATGGATGTGGTGGATTACTCAGTCATAGTAGATGGACTTTGCAAGGAAGGGTATGTTGATAAGGCCATAGAACTTTGTAATTTTTCCACAAAGAGGGGGGTTGCTCTTAATGTGGTTACTTATAACTCACTTTTCAATGGGTTATGCCGTCACAGTTGCCTTGTTGAAGCATTCAGGCTCTTTGACTCATTGGAGAAGAACAATATCATTCCTTCTGATATTACATATGGAACACTGATTGATGCTTTAGTTAGAGAAGGCTTTCTGTTGGATGCCAGGCAGTTGTTTGAGAGGATGGTTCTCAAGAATATAAAACCAAATACCCATATCTACAATTCGCTGATTGACGGATACTGCAAGTTTGGGAACTTGGAAGAAGCATTGAAACTTGTTCATGATTTAGAGGACAGATCCCTCAAGCCAGACAAATTCACTGTGAGTGCTGTGATTTATGGCTTTTCCTTGGACGGCGACATGGAGGGGGCACTTCAATTTTTTGTTGATATGAAAAGAAAGAAGCTTTCCCCTGATTTCTTGGGCTTCTTGTATTTAGTAAGGGGTCTATGTGCGAAGGGCAGAATGGAAGAGGCCAGGAGCATTTTGAGAGAGATGCTTCAAGATGAATCTGTTGTTAAGCTGATTAATAGAGTTGATGTTGAGATTGAGAATGAGTCTGTAGAAGGTTTTCTTGTCCGCTTATGTGATCAGGGAAGCATTGAGGGTGTTCTTATCATTCTCAATGAAATTGGATCGATGTTTTTCCCTTGTAAACAAACTGTCTCTTGTACTGGACCAAAGCCAACTTTTGACTGTGAGGAAGACATGCAGCATTTTAGCTCTCTCGAGCCTTTATCCTTCATGCATCAGATGAACTTTGATGCTTTATACTCGCAAGTAGCATCCCTTTGCTCAATAGGTGATCTCAAGGGGGCTAACGCATTGGCAAAAGGAATGATCTCTAACTTTGTGAAAAAACAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57857.p1 GENE.R_Transcript_57857~~R_Transcript_57857.p1 ORF type:complete len:433 (+),score=89.89,PPR_2|PF13041.2|3.6,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|6.7e-14,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|7.6e-15,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|0.062,PPR_2|PF13041.2|1.3e+03,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|3e-06,PPR_1|PF12854.3|6.4e-11,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|3.4e+02,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0019,PPR|PF01535.16|1e-06,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|5.9e-08,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.00057,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.8e+03,PPR_3|PF13812.2|88,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|4.6e-05,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1.4 R_Transcript_57857:379-1677(+)
MAKRAGQCYYKILQDFIRDYDDGKIQPILTTIIKRYGLTKPTLGKMLVHYLCMETSVDGAIGLINELNRNNLKVNFPVDVIGMLTEQGRSLDVYKLVMGVPNDIPTMDVVDYSVIVDGLCKEGYVDKAIELCNFSTKRGVALNVVTYNSLFNGLCRHSCLVEAFRLFDSLEKNNIIPSDITYGTLIDALVREGFLLDARQLFERMVLKNIKPNTHIYNSLIDGYCKFGNLEEALKLVHDLEDRSLKPDKFTVSAVIYGFSLDGDMEGALQFFVDMKRKKLSPDFLGFLYLVRGLCAKGRMEEARSILREMLQDESVVKLINRVDVEIENESVEGFLVRLCDQGSIEGVLIILNEIGSMFFPCKQTVSCTGPKPTFDCEEDMQHFSSLEPLSFMHQMNFDALYSQVASLCSIGDLKGANALAKGMISNFVKKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST