Transcript Information: R_Transcript_57890.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value2.1E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.73892701923072
Condition 2: 8 Hour
Replicate 10.39493330560073
Replicate 20
Replicate 30.29276791323205
Condition 3: 24 Hour
Replicate 10
Replicate 20.35572998210608
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57890.p1 GENE.R_Transcript_57890~~R_Transcript_57890.p1 ORF type:complete len:124 (+),score=14.08,UBA_4|PF14555.2|6.6e-13 R_Transcript_57890:203-574(+)
ATGAACAAGCTGGGGAGAGGACATCGAGACAAATTGCAGCAGTTTATGGCAATAACTGGTTCCAGCGAAAAAGTTGCTCTTCAGGCGTTAAAGAGTAGTGACTGGCACCTTGAGGGAGCATTTGATGTATTTTACAGTCAGCCTCAAACTAAATCATATACTGATACTAAGCATCTGGAGGAGCTGTACAACAGATACAAGGATCAATATGCTGACATGATAATGGTGGATGGTATTACTCTCCTATGCAATGACCTCCAGGTTGATCCCCAAGATATTGTAATGGTAAGTTCAACCAATGTGCTTTTTCTTTTTATCCCCTTTCCACTAGTACACATGAAAAGTGCTTTAATTAAATTTCTCGTTATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57890.p1 GENE.R_Transcript_57890~~R_Transcript_57890.p1 ORF type:complete len:124 (+),score=14.08,UBA_4|PF14555.2|6.6e-13 R_Transcript_57890:203-574(+)
MNKLGRGHRDKLQQFMAITGSSEKVALQALKSSDWHLEGAFDVFYSQPQTKSYTDTKHLEELYNRYKDQYADMIMVDGITLLCNDLQVDPQDIVMVSSTNVLFLFIPFPLVHMKSALIKFLVI*

Click here to download the sequence:
Link to NCBI Protein BLAST