Transcript Information: R_Transcript_57891.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value3.1E-125
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.210800795599
Replicate 211.372996058828
Replicate 310.117142438301
Condition 2: 8 Hour
Replicate 17.5498083587339
Replicate 215.373106265815
Replicate 310.815334661314
Condition 3: 24 Hour
Replicate 111.383246083737
Replicate 210.660041797112
Replicate 314.044610507426


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57891.p1 GENE.R_Transcript_57891~~R_Transcript_57891.p1 ORF type:complete len:240 (+),score=46.31,Cullin_binding|PF03556.11|4.1e-23,UBA_4|PF14555.2|2.1e-12 R_Transcript_57891:203-922(+)
ATGAACAAGCTGGGGAGAGGACATCGAGACAAATTGCAGCAGTTTATGGCAATAACTGGTTCCAGCGAAAAAGTTGCTCTTCAGGCGTTAAAGAGTAGTGACTGGCACCTTGAGGGAGCATTTGATGTATTTTACAGTCAGCCTCAAACTAAATCATATACTGATACTAAGCATCTGGAGGAGCTGTACAACAGATACAAGGATCAATATGCTGACATGATAATGGTGGATGGTATTACTCTCCTATGCAATGACCTCCAGGTTGATCCCCAGGATATTGTAATGTTGGTTATCTCCTGGCACATGAAGGCTGCAACAATGTGTGAATTCTCAAAACAAGAATTCATTGGTGGTTTGCAAGCAATAGGGGTTGATTCTCTCGAGAAGTTTCGTGAGAGGATACCGTACATGCGCTCTGAGCTGAAAGATGAACAAAAGTTTCGTGATATATACATCTTTGCTTTTGGGTGGGCTAAGGAAAAGGGTCAGAAGTCTTTGGCATTGGATACAGCTATTGGGATGTGGCAGCTACTATTTGCTGAGAAACAGTGGCCTTTAATTGATCACTGGTGCGAGTTTTTGCAGGCTCGGCATAATAAAGCTATATCAAGAGACACCTGGGCTCAACTTCTGGAATTTGTTAGGGTAAGAGTCTTCTTTGGGTGTGCACTTGTGCAAGTCTTATACCTTGCTTTCTGCAAGACTCGATTGTCCGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57891.p1 GENE.R_Transcript_57891~~R_Transcript_57891.p1 ORF type:complete len:240 (+),score=46.31,Cullin_binding|PF03556.11|4.1e-23,UBA_4|PF14555.2|2.1e-12 R_Transcript_57891:203-922(+)
MNKLGRGHRDKLQQFMAITGSSEKVALQALKSSDWHLEGAFDVFYSQPQTKSYTDTKHLEELYNRYKDQYADMIMVDGITLLCNDLQVDPQDIVMLVISWHMKAATMCEFSKQEFIGGLQAIGVDSLEKFRERIPYMRSELKDEQKFRDIYIFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLIDHWCEFLQARHNKAISRDTWAQLLEFVRVRVFFGCALVQVLYLAFCKTRLSV*

Click here to download the sequence:
Link to NCBI Protein BLAST