Transcript Information: R_Transcript_57892.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value2.2E-108
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.485147913607
Replicate 213.772802566654
Replicate 38.9315261269402
Condition 2: 8 Hour
Replicate 19.996522845435
Replicate 210.359858100733
Replicate 39.9084479992021
Condition 3: 24 Hour
Replicate 111.268281529194
Replicate 29.8135784971835
Replicate 38.9358060418985


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57892.p1 GENE.R_Transcript_57892~~R_Transcript_57892.p1 ORF type:complete len:218 (+),score=39.32,Cullin_binding|PF03556.11|6.4e+03,Cullin_binding|PF03556.11|1.5e-35 R_Transcript_57892:327-980(+)
ATGTATTTTACAGTCAGCCTCAAACTAAATCATATACTGATACTAAGCATCTGGAGGAGCTGTACAACAGATACAAGGTGTAGTTCTTGGACATGTGTTGCAGATCAATATGCTGACATGATAATGGTGGATGGTATTACTCTCCTATGCAATGACCTCCAGGTTGATCCCCAAGATATTGTGATGTTGGTTATCTCCTGGCACATGAAGGCTGCAACAATGTGTGAATTCTCAAAACAAGAATTCATTGGTGGTTTGCAAGCACTAGGGTTTGATTCTCTCGAGAAGTTTCGCGAGGGGATACCATTCATGCGCTATGAGCTGAAAGATGAACAAAAGTTTCGTGATATATACATCTTTGCTTTTGGGTGGGCTAAGGAAAAGGGTCAGAAGTCTTTGGCATTGGATACAGCTATTGGGATGTGGCAGCTACTATTTGCTGAGAAACAGTGGCCTTTAATTGATCACTGGTGCGAGTTTTTGCAGGCTCGGCATAATAAAGCTATATCAAGAGACACCTGGGCTCAACTTCTGGAGTTTGTTAGGACGGTTGATCCACAACTCTCTAATTATGATGCAGAAGGTGCCTGGCCTTATCTCATCGATGAATTCGTTGAATACTTGTATGAGAATGGTGTCATCCCAAGAGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57892.p1 GENE.R_Transcript_57892~~R_Transcript_57892.p1 ORF type:complete len:218 (+),score=39.32,Cullin_binding|PF03556.11|6.4e+03,Cullin_binding|PF03556.11|1.5e-35 R_Transcript_57892:327-980(+)
MYFTVSLKLNHILILSIWRSCTTDTRCSSWTCVADQYADMIMVDGITLLCNDLQVDPQDIVMLVISWHMKAATMCEFSKQEFIGGLQALGFDSLEKFREGIPFMRYELKDEQKFRDIYIFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLIDHWCEFLQARHNKAISRDTWAQLLEFVRTVDPQLSNYDAEGAWPYLIDEFVEYLYENGVIPRG*

Click here to download the sequence:
Link to NCBI Protein BLAST