Transcript Information: R_Transcript_57893.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value1.9E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.4356313575593
Replicate 26.7756985407177
Replicate 37.9397855412959
Condition 2: 8 Hour
Replicate 110.047984420583
Replicate 25.7906666122592
Replicate 36.5808628145626
Condition 3: 24 Hour
Replicate 16.6769718231968
Replicate 27.4689123733031
Replicate 36.8889588456769


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57893.p1 GENE.R_Transcript_57893~~R_Transcript_57893.p1 ORF type:complete len:251 (+),score=53.85,Cullin_binding|PF03556.11|2.4e-36,UBA_4|PF14555.2|2.3e-12 R_Transcript_57893:203-955(+)
ATGAACAAGCTGGGGAGAGGACATCGAGACAAATTGCAGCAGTTTATGGCAATAACTGGTTCCAGCGAAAAAGTTGCTCTTCAGGCGTTAAAGAGTAGTGACTGGCACCTTGAGGGAGCATTTGATGTATTTTACAGTCAGCCTCAAACTAAATCATATACTGATACTAAGCATCTGGAGGAGCTGTACAACAGATACAAGGATCAATATGCTGACATGATAATGGTGGATGGTATTACTCTCCTATGCAATGACCTCCAGGTTGATCCCCAGGATATTGTAATGTTGGTTATCTCCTGGCACATGAAGGCTGCAACAATGTGTGAATTCTCAAAACAAGAATTCATTGGTGGTTTGCAAGCAATAGGGGTTGATTCTCTCGAGAAGTTTCGTGAGAGGATACCGTACATGCGCTCTGAGCTGAAAGATGAACAAAAGTTTCGTGATATATACATCTTTGCTTTTGGGTGGGCTAAGGAAAAGGGTCAGAAGTCTTTGGCATTGGATACAGCTATTGGGATGTGGCAGCTACTATTTGCTGAGAAACAGTGGCCTTTAATTGATCACTGGTGCGAGTTTTTGCAGGCTCGGCATAATAAAGCTATATCAAGAGACACCTGGGCTCAACTTCTGGAATTTGTTAGGACAGTTGATCCACAACTCTCTAATTATGATGCAGAAGGTGCCTGGCCTTATCTCATCGATGAATTCGTTGAATACTTGTATGAGAATGGTGTCATCCCACGAGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57893.p1 GENE.R_Transcript_57893~~R_Transcript_57893.p1 ORF type:complete len:251 (+),score=53.85,Cullin_binding|PF03556.11|2.4e-36,UBA_4|PF14555.2|2.3e-12 R_Transcript_57893:203-955(+)
MNKLGRGHRDKLQQFMAITGSSEKVALQALKSSDWHLEGAFDVFYSQPQTKSYTDTKHLEELYNRYKDQYADMIMVDGITLLCNDLQVDPQDIVMLVISWHMKAATMCEFSKQEFIGGLQAIGVDSLEKFRERIPYMRSELKDEQKFRDIYIFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLIDHWCEFLQARHNKAISRDTWAQLLEFVRTVDPQLSNYDAEGAWPYLIDEFVEYLYENGVIPRG*

Click here to download the sequence:
Link to NCBI Protein BLAST