Transcript Information: R_Transcript_57897.p2


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value5.4E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3010674067044
Replicate 24.4672979609145
Replicate 33.8990191653025
Condition 2: 8 Hour
Replicate 11.5629275498242
Replicate 24.2818709908653
Replicate 33.0896358502786
Condition 3: 24 Hour
Replicate 12.1980879260568
Replicate 22.3463041372955
Replicate 33.2598709108145


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57897.p2 GENE.R_Transcript_57897~~R_Transcript_57897.p2 ORF type:5prime_partial len:94 (+),score=10.77,Cullin_binding|PF03556.11|2.1e-16 R_Transcript_57897:1-282(+)
CCCTTTCCCTCAAAATTGAACCCTAACCCTAGCATCTCTCTCTCCTCCGGCGCTCTCTCTTCCAGCGGCTTCTCCGGCGACGGCGACAACAAGACGACCGCAACCTCCTTTCCGGCTCGGCATAATAAAGCTATATCAAGAGACACCTGGGCTCAACTTCTGGAATTTGTTAGGACAGTTGATCCACAACTCTCTAATTATGATGCAGAAGGTGCCTGGCCTTATCTCATCGATGAATTCGTTGAATACTTGTATGAGAATGGTGTCATCCCACGAGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57897.p2 GENE.R_Transcript_57897~~R_Transcript_57897.p2 ORF type:5prime_partial len:94 (+),score=10.77,Cullin_binding|PF03556.11|2.1e-16 R_Transcript_57897:1-282(+)
PFPSKLNPNPSISLSSGALSSSGFSGDGDNKTTATSFPARHNKAISRDTWAQLLEFVRTVDPQLSNYDAEGAWPYLIDEFVEYLYENGVIPRG*

Click here to download the sequence:
Link to NCBI Protein BLAST