Transcript Information: R_Transcript_57900.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value7.3E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.252960954719
Replicate 216.282845220803
Replicate 314.492017662872
Condition 2: 8 Hour
Replicate 116.240624709908
Replicate 214.831197139562
Replicate 315.373302872369
Condition 3: 24 Hour
Replicate 118.741067124656
Replicate 214.628488039669
Replicate 315.410730850979


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_57900.p1 GENE.R_Transcript_57900~~R_Transcript_57900.p1 ORF type:5prime_partial len:98 (-),score=2.11 R_Transcript_57900:274-567(-)
TTTGATATATATTCTTCTTGGAGATTAATCCTTAACACTAATTTGTTTCCATCTTTTTTTATTGATCCCAGGCTCGGCATAATAAAGCTATATCAAGAGACACCTGGGCTCAACTTCTGGAATTTGTTAGGACAGTTGATCCACAACTCTCTAATTATGACGCAGACGGTGCCTGGCCTTATCTCATCGATGAATTCGTTGAATACTTGTATGAGAATGGTGTCATCCCAAGAGGTTAATGATGGGAAACAGGATCGGATTGCGTTCTGTGCAAGGGTTTATGTTTTGATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_57900.p1 GENE.R_Transcript_57900~~R_Transcript_57900.p1 ORF type:5prime_partial len:98 (-),score=2.11 R_Transcript_57900:274-567(-)
FDIYSSWRLILNTNLFPSFFIDPRLGIIKLYQETPGLNFWNLLGQLIHNSLIMTQTVPGLISSMNSLNTCMRMVSSQEVNDGKQDRIAFCARVYVLI*

Click here to download the sequence:
Link to NCBI Protein BLAST