Transcript Information: R_Transcript_58160.p1


Annotated TAIR IDAT3G08840.2
Annotated Gene NameD-alanine--D-alanine ligase family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2679648-2686157 | Reverse length=937
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9590071559319
Replicate 23.5103532566433
Replicate 34.4042212306082
Condition 2: 8 Hour
Replicate 13.607635274359
Replicate 24.4628301271332
Replicate 35.3677176651719
Condition 3: 24 Hour
Replicate 16.1172840575387
Replicate 24.908850724862
Replicate 36.3124414770989


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_58160.p1 GENE.R_Transcript_58160~~R_Transcript_58160.p1 ORF type:complete len:957 (+),score=206.43,Dala_Dala_lig_N|PF01820.17|1.8e-22,Dala_Dala_lig_N|PF01820.17|7e-18,Dala_Dala_lig_C|PF07478.9|6.3e-13,Dala_Dala_lig_C|PF07478.9|1.3,Dala_Dala_lig_C|PF07478.9|6.3e-10,ATP-grasp_4|PF13535.2|5.1e+02,ATP-grasp_4|PF13535.2|0.0012,ATP-grasp_4|PF13535.2|2 R_Transcript_58160:156-3026(+)
ATGGCTTCTCTCTTCAAATCCTCTCTCTTCTACAATCCCGAAGTTTGTCGTCGAAGAATCAACGCCATCGACAAACATTCACAACCTCTCTTCTCATCAAAAACCGTAATCAGCTCAAAATTGGACCTCAAAACCCGAAATTTGTCATCACCTAGGGATTTCCGTCAAATTTCTAGAACAATCAAAGCGAGCACCGAAGTAGCAGGTGATCGAAGTACTGTTATCGAAGCTGAGAAGAACAAAAATAGGAGAGAGAAAGGCGAGGTTCTTCGTGTTGGCTTGATTTGTGGTGGTCCTTCTGCTGAGCGTGGAATTTCTCTCAATTCTGCTCGTTCTGTTCTTGATCATATTCAAGGGGATGATTTGCATGTGAGCTGCTACTACATTGATTCTCAGCTTAATGCTTTTGCCATATCCCCTGCCCAGCTTTATTCAAACACCCCTGCTGATTTTGACTTCAAAATTGAAAGCCTTGCGCAAGGTTTCCGCTCTTTGTCAGATTTTGCGGAGCACCTTGCCAATTCAGTTGATATTGTCTTCCCTGTAATCCATGGTCCCTTTGGTGAAGATGGTACCATTCAGGAGCTACTGGAGAGATCAAACATTCCATTTGTTGGTACACGATCAAGTGAATGTCGCAAGGCATTTGACAAGTATGAAGCTTCTGTGGAGCTTGGGAAAAAAGGATTCTTGACAGTTCCCAGTTTCTTAGTGCAGGGTAGTTACTCAGATATAAGTGATCTATTGAAGTGGTTTGAAAGCAATAAATTGGATGTGGATTCAGGAAAAGTAGTGGTAAAACCAGCAAGAGGAGGATCAAGCATAGGTGTTACTGTTGCTTATGGAGCTGCTGATTCTTTCAAAAAGGCTAATCGAATAATTTCAGAGGGGATTGATGATAAAGCCCTGGTTGAGCTCTTCCTTGAAGGAGGAAGGGAGTTTACTGCTATTGTTCTTGATGTGGGAAATGGTTCTGACTGCAATCCTGTAGTATTATTGCCAACAGAGGTGGAGCTTCAATCTCATGGTAGTGTTGACATAAGAGAGAGGGATGCAATATTCAATTACCGCAGGAAGTATCTACCTACTCAGCAGGTTGCTTACCATACCCCCCCTCGTTTTCCTATAGATGTCATCGAGTTCATTCGTGGTGGAGCCTCACTGTTATTCCAACAGCTTGAATTATGTGATTTTGCTAGAATTGATGGTTGGTATTTGCCGCCATCTTCTCAAATATCTTCCTCAGGTCAACAGTTTGGAAGGACTAAATCCGGGATAGTGGTATTCACAGACATCAATCTGATCAGTGGGATGGAGCAGACCAGTTTTCTTTTTCAACAAGCTTCAAAGGTGGGGTTTTCCCATTCAAATATCCTAAGAAGCATCCTTCAGCATGCATGTTTACGATTTCCAAGCCTGGCGTCTTATTCTGGTGCATCACCGCTGTTGTTCGGAAAGCCAAAGAACTCCTGGATAAAGGAGCCAGATGCCAAAAGGGTTAATATTCGTAAAGTTTTTGTAATTTTTGGAGGGAACACTTCAGAGAGACAAGTATCCCTTATGAGTGGAACAAATGTTTGGCTCAACTTGCAAGCCTTTGATGATCTTGATGTGACTCCTTGTTTGCTTGCACCAACGAGTTCATCCTACAAACAAATGACCAAGGAGGGTGACTTGAGCTCCAGATCGGTTTGGTCTTTGCCTTATTCTCTAGTGCTGAGGCATACTACGGAGGAAGTACTAGCAGCTTGCATGGAGGCATTGGAACCAAACCAAGCTGAACTGACATCACACTTGCGGAAACAGGTGATGAATGATCTTGTAGAAAGCCTGAAGAAGCACAGCTGGTTTACTGGATTTGATGTATCTGATGAACTGCCTGTGAAGTATTCTCTTGAGGAATGGATCAATCTGGCGAAGGAAGTTCAGGCCACAGTTTTTATTGCAGTGCATGGAGGCATTGGAGAAGATGGTACACTTCAATCTTTGTTAGAGGCTGAAGGGATTCCTTACACTGGTCCTGGTATAATGTCTTCCAAAATATGCATGGACAAAGTTGCTACTTCACTTGCTCTTAAACAACTTGCCGATTTTGGTGTTCTTACCATAAACAAGGAAGTAAGGACAAAGCAAGACCTCCTTCACATGCCTGCTGCTGATCTTTGGCTTGATCTGACAAGGAAGCTGGAGTGTGAAACCCTATGCATTAAACCTGCAAGAGATGGCTGCTCAACTGGTGTTGCAAGACTACGCTGTTCGGAAGACTTGGCAATATATGTAAATGCGTTGGAGAATTGTCTTCTACGAATCCCTGCAGACAGTTTCTCAAAGGCCCATGGAATGATTGAGATGCCAAATCCTCCTCCTGAGCTTTTAATATTTGAACCCTTCATTGAGACGGATGATATTAGGGTGTCATCCAGTACACTTGATTTCAATTGGAAAGGACAAAGTAGGTGGATAGAGGTAACTGTTGGTGTGATGGGGAAAAGAGGATCGATGCATTCTTTGAGTCCCAGTGTGACTGTTAAGGAAACTGGCGATATTTTATCACTAGAAGAGAAATTTCAAGGTGGAACTGGCATCAATATTACTCCACCCCCGTTGTCAATAATGAGAAATGAGGCCCTTGGGAGATGCAAACAACGTATTGAACTAATAGCGAATACTTTGCAACTAGAAGGATTTTCACGAATAGACGCCTTTGTTAATGTTGATACTGGGGAGGTACTCGTCATAGAGGTCAACACTGTGCCCGGAATGACGCCATCCACTGTTTTAATTCATCAGGCATTAGCAGAGCAGCCGCCTATGTATCCACAGCAGTTCTTCCGCAAATTGCTTGATTTGGCATTAGAGAGATCAATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_58160.p1 GENE.R_Transcript_58160~~R_Transcript_58160.p1 ORF type:complete len:957 (+),score=206.43,Dala_Dala_lig_N|PF01820.17|1.8e-22,Dala_Dala_lig_N|PF01820.17|7e-18,Dala_Dala_lig_C|PF07478.9|6.3e-13,Dala_Dala_lig_C|PF07478.9|1.3,Dala_Dala_lig_C|PF07478.9|6.3e-10,ATP-grasp_4|PF13535.2|5.1e+02,ATP-grasp_4|PF13535.2|0.0012,ATP-grasp_4|PF13535.2|2 R_Transcript_58160:156-3026(+)
MASLFKSSLFYNPEVCRRRINAIDKHSQPLFSSKTVISSKLDLKTRNLSSPRDFRQISRTIKASTEVAGDRSTVIEAEKNKNRREKGEVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLHVSCYYIDSQLNAFAISPAQLYSNTPADFDFKIESLAQGFRSLSDFAEHLANSVDIVFPVIHGPFGEDGTIQELLERSNIPFVGTRSSECRKAFDKYEASVELGKKGFLTVPSFLVQGSYSDISDLLKWFESNKLDVDSGKVVVKPARGGSSIGVTVAYGAADSFKKANRIISEGIDDKALVELFLEGGREFTAIVLDVGNGSDCNPVVLLPTEVELQSHGSVDIRERDAIFNYRRKYLPTQQVAYHTPPRFPIDVIEFIRGGASLLFQQLELCDFARIDGWYLPPSSQISSSGQQFGRTKSGIVVFTDINLISGMEQTSFLFQQASKVGFSHSNILRSILQHACLRFPSLASYSGASPLLFGKPKNSWIKEPDAKRVNIRKVFVIFGGNTSERQVSLMSGTNVWLNLQAFDDLDVTPCLLAPTSSSYKQMTKEGDLSSRSVWSLPYSLVLRHTTEEVLAACMEALEPNQAELTSHLRKQVMNDLVESLKKHSWFTGFDVSDELPVKYSLEEWINLAKEVQATVFIAVHGGIGEDGTLQSLLEAEGIPYTGPGIMSSKICMDKVATSLALKQLADFGVLTINKEVRTKQDLLHMPAADLWLDLTRKLECETLCIKPARDGCSTGVARLRCSEDLAIYVNALENCLLRIPADSFSKAHGMIEMPNPPPELLIFEPFIETDDIRVSSSTLDFNWKGQSRWIEVTVGVMGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINITPPPLSIMRNEALGRCKQRIELIANTLQLEGFSRIDAFVNVDTGEVLVIEVNTVPGMTPSTVLIHQALAEQPPMYPQQFFRKLLDLALERSM*

Click here to download the sequence:
Link to NCBI Protein BLAST