Transcript Information: R_Transcript_58188.p1


Annotated TAIR IDAT1G02870.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:637401-638603 | Reverse length=193
E-Value1.2E-94
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 159.472088744483
Replicate 257.665895509551
Replicate 353.126424284034
Condition 2: 8 Hour
Replicate 160.582398249757
Replicate 267.607548853162
Replicate 368.004625704548
Condition 3: 24 Hour
Replicate 166.717759032624
Replicate 265.233864324243
Replicate 365.354836529891


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_58188.p1 GENE.R_Transcript_58188~~R_Transcript_58188.p1 ORF type:5prime_partial len:213 (+),score=49.60,Nop16|PF09420.6|6.2e-22 R_Transcript_58188:2-640(+)
CCCGTCCCACCCTTCTCCTCCTCAACAGAGTACAGACCAACCCCTTATAGAAACCACAGAGAGATGGGCAGGTCAAGAAGAAAGTACAAGAGATCAAGAACAAAAGTTCAAGTGGGTCTCCCAAAGAAGAATCCAAGAGTATTCAAACCAGCCTTCAATCTCCCACCAAAGCTCAGAACCCTACTTGACCCCTTAGGCGCAAAATGGGATGAAAAGGGCAGTGTTATCAGCAACTACAAGCAATTTGGTGTTGTTTCTAATCCCAATTTGCTTGGTATTCGTTCAAGAACTTCTCATATGATTGAGAGCGACTCTCTTAATGTTCCCCCTCCTCGTTCTGATGAGCCTCTTGATGAGTTTGAGCCCATTGATTCTGGCAGTGATCTTGAAGAAGATGATCTGAAAACAGCACTTGGGAAGAAGCGAAGGGATGGTAAAAGTGCACCATTACAGCCATTGACTGCAATGCAACGTGAGCATATTCGTCCTTTAATTGAGAAGTACGGAAATGACTATGAGAGAATGTTTATGGATATAAAGCTAAACAGCATGCAGCATTCTGTTGCCACATTGAAGAATTTGTGTAAAAGATACCATCAATGGAAAGATAAGAATCCCTTGATATTAGGCGTCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_58188.p1 GENE.R_Transcript_58188~~R_Transcript_58188.p1 ORF type:5prime_partial len:213 (+),score=49.60,Nop16|PF09420.6|6.2e-22 R_Transcript_58188:2-640(+)
PVPPFSSSTEYRPTPYRNHREMGRSRRKYKRSRTKVQVGLPKKNPRVFKPAFNLPPKLRTLLDPLGAKWDEKGSVISNYKQFGVVSNPNLLGIRSRTSHMIESDSLNVPPPRSDEPLDEFEPIDSGSDLEEDDLKTALGKKRRDGKSAPLQPLTAMQREHIRPLIEKYGNDYERMFMDIKLNSMQHSVATLKNLCKRYHQWKDKNPLILGVK*

Click here to download the sequence:
Link to NCBI Protein BLAST