Transcript Information: R_Transcript_58405.p1


Annotated TAIR IDAT1G77800.1
Annotated Gene NamePHD finger family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29253800-29260190 | Forward length=1375
E-Value1.6E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.1264804773594
Replicate 23.7801981202183
Replicate 36.245149653272
Condition 2: 8 Hour
Replicate 16.8772028092571
Replicate 26.4184012692292
Replicate 39.6733891989305
Condition 3: 24 Hour
Replicate 19.2350850062061
Replicate 26.1037702073717
Replicate 38.6469944442063


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_58405.p1 GENE.R_Transcript_58405~~R_Transcript_58405.p1 ORF type:complete len:972 (+),score=228.78,zf-HC5HC2H_2|PF13832.2|1.8e+03,zf-HC5HC2H_2|PF13832.2|3.8e-21,zf-HC5HC2H|PF13771.2|7.3e+03,zf-HC5HC2H|PF13771.2|2.3e+03,zf-HC5HC2H|PF13771.2|2.8e-17,PHD_2|PF13831.2|1.2e-10,PHD_2|PF13831.2|1.9e+03,PHD_2|PF13831.2|12,PHD|PF00628.25|1.9e-06,PHD|PF00628.25|4.6 R_Transcript_58405:398-3313(+)
ATGACCGGAAACAGCCGATGTCATGGTTTGACGGCGATGATGGGTAGGGGAGCCGACGGAGGTTGCGGTACGGAGGAGAAGCCGTGCCCGTTGCCGAAGCTGACGTCACCGGCGGGGAAATCTCCGGCACCGGCGAACTCGCCGGAAAATCTGGAAACGGTGCGTTTAGGTGTGGACTTGTACACACAGGCTTTGAAAGCGCTTTCGGAGCGTTCGCCCTTCGATTCCGATGAAGCTTTGGCCACTAATGTCACCACTCTACCTAGTGGCTTGGCTAGTTTGCTGTCAAAGCACACAGATAGTAGAAGGAAGCACAAACGCCCTCATTCCGATACTAAGAAGTCACGTAAAGGCTCAACGGAGAAGTCGAAAGGTTCGAGTTTGTGGTCTGAGTTAGAAGATTACTTCAGGGAGCTGAAACGGCAAGATATTGAGAGGTTACATCGATTGTTTTCGTCATTTGGTTCGTCAGTGAGTAGTAATTCATGTTTTACAATTCCAGTTTTAGGTAATGCTCTTAGGAAGAAGAATAAGAAGAGGAAGGAAAATGGGAATAATAATGTTGATGATGTTGTTCAGACAGTTGTAGTAGCTAAGGAGGAGGCTGTGTGCTCTGATGTTCCCATTTCGGATTCCAGAGCCTTAGAAGTTGAGGAATTGGAGAGTAATGGTAAAGTTGAGCAGGTGATGGAAATAGATAATGGGAGTAGCAAGGATAGTATGGTTGTAGTTGAGCAGAGTCATGTGCCTGTGCTTGAATTGTCCTCCCCACAATCTTGTAGCAGTGTAGAGTGGGTTTTAGGCTCTAGGAACAGGGTTTTGTTGACGACCACGAGGCCAACAAAGAAAAGGAAGCTATTAGGTGAGACTGCAGGGTTGGAAAGGCTCATTGTTGCTCAGCCTTGTGAAGGCAGTACCACCTTATGTCATGTTTGTAGTATGGGAGACACAGGGGATCAGTTGAACCAGCTTGTTGTTTGCAAGTCTTGCAATGTTGTTGTTCATCAGAGATGTTATGGTGTGCAAGGAGAAATAGATGGGTCTTGGTTATGCTCTTGGTGTAAGCACAATTTGGATGCTAAAACTGGACAAGTTTCAGGCAGTGATAAACCTTGTGTTCTTTGTCCGAAGTCAGGTGGGGCTTTGAAGCGCTTTCAGAGACCCGGGAGTGGGAATGATGAATCTATTGAGTTTGCTCACTTGTTTTGTAGTCAGTGGATGCCTGAGGTTCACATTGATGATACCAGGTTGATGGAGCCTCTCTTGTGTCTAGATGGGATAAAGGATGTACGAACGAAGTTAGTGTGTAATTTGTGCAAAGTCAAGCTTGGTTCGTGTATACGGTGCAGTGATGGGTCATGCAGAACTTCATTTCACCCTATCTGTGCGAGGGAGGCAAAAAATAAGCTTGAGATATGGGGAAAGTTTGGGTGTGATGATATTGAATTACGGGCTTTCTGTGCAAAACATTCAGGGGCTGTTGGTTCTTCTGTGAAAAAAGAGGAAAAGCATGCTGTTGTCAGTGATTCACCTGGTATCACGAATCAACCAGCAGTGTTGTCTGTAAATAAAATAAAGAAGCTGAAAATTGGCTGTAAGAATGGCAACAAAGTGACCTTCCACATTGGAGCAGCAGATGCTAAATCCAACCATTTGGGAGAACCGGAGGCACAAGGAATAGTATCGAAAGATGCAAAAGCAAAGGTTAAATTAGGATTAGATGAAGAGAAGGAGGTGAGCGATGTTGCGGCTCCGGAGAGGACCGCTAGTGAAGATGTGAAGACATCATATCTTCTAGATCTTGGTCTAGTTTTAAAGAAGCTAGTTGAACGAGGCAAAGTGACCCCGGAGCAAATTGCTTCTGACATTGGCATCTCAGCAGATTCCTTAGCATCGAGACTCACTGACAATCATTTGGGTTCTGAGTTGTCCTGTAAGATATTAAAGTGGCTTAGAGATCATGCTTACATGGATACTCAACAAAAGGATTTGAGAGCTAAAGTGAGCTCCTTGGTTACTTCAAAGGACGAGTTAGGACCTGTTGATAGTACAGATTCTGTTGCAGTGAGAGATCTGGAGATGTCAGATGTTGTTCCGGTTAAGTCTGTTCCCCCAAGGCGGAGAACAGTTGGAAACATCAGGTTTTTGAAGGAGGACAAGGTTATGTCCATGTGGAATGATGGACTTATTGGGAATGGTCTATCAACTAATGATGGAATAGAGAAAGAACATGTGGTGGAAGATTGTGATGCTTCTAATAAAGAGACAATATCGGATGGTACTGGAGAGATTAGGGATGAGACCACCGGATTTGAAGATCTACTAGAAGAAACTTCACCTACATCTGGAAGTTCTCGGTTGAAATCAGATAGTCCATGTGATGTTGAACGTGATGGAGCTGAGGAGGGTACTTCATCTGGAAAAAGTTCGTTGTTGGATATGGACCAGGATATTCCTTCTTGTTCTTCTGTAAATGAAACAAGCTTTTTTGATAGAGATGTTGAACCTGGAAGAGATTCCTTTGTGCATCCGTATGTTCTAAAGAAGCTGGAAGAGGTTCAAAGTTGGATTATGCAAGGTTGTGAAGAGCAAAAGTTTCCTTCAACTGAGCGCTTGACTACTGCTGGTGTTAGTTGTGAAGAGAAAAAGCTTCGTGTTGGTGAGGCTGAGGGTCAGGGGAGTAATGAAGCGAACTTAAGTAACTTGGTGAAGGCCAAACAGATGGGTGTCCTGGACCTGTTCCCAGAGGATGAAGTGGAAGGAGAAATCATTTATCTTCAGCAGAGGTTGCTTGGCAATGCTGTTGAACAAAAGCATCATGCCAATCAGCTTCTTGGTAAGATTGTCAGAAATCTTCCACACGAGATGGACACACTCCGGAAGCAAAGATGGGATGATGTCCTTGATAACCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_58405.p1 GENE.R_Transcript_58405~~R_Transcript_58405.p1 ORF type:complete len:972 (+),score=228.78,zf-HC5HC2H_2|PF13832.2|1.8e+03,zf-HC5HC2H_2|PF13832.2|3.8e-21,zf-HC5HC2H|PF13771.2|7.3e+03,zf-HC5HC2H|PF13771.2|2.3e+03,zf-HC5HC2H|PF13771.2|2.8e-17,PHD_2|PF13831.2|1.2e-10,PHD_2|PF13831.2|1.9e+03,PHD_2|PF13831.2|12,PHD|PF00628.25|1.9e-06,PHD|PF00628.25|4.6 R_Transcript_58405:398-3313(+)
MTGNSRCHGLTAMMGRGADGGCGTEEKPCPLPKLTSPAGKSPAPANSPENLETVRLGVDLYTQALKALSERSPFDSDEALATNVTTLPSGLASLLSKHTDSRRKHKRPHSDTKKSRKGSTEKSKGSSLWSELEDYFRELKRQDIERLHRLFSSFGSSVSSNSCFTIPVLGNALRKKNKKRKENGNNNVDDVVQTVVVAKEEAVCSDVPISDSRALEVEELESNGKVEQVMEIDNGSSKDSMVVVEQSHVPVLELSSPQSCSSVEWVLGSRNRVLLTTTRPTKKRKLLGETAGLERLIVAQPCEGSTTLCHVCSMGDTGDQLNQLVVCKSCNVVVHQRCYGVQGEIDGSWLCSWCKHNLDAKTGQVSGSDKPCVLCPKSGGALKRFQRPGSGNDESIEFAHLFCSQWMPEVHIDDTRLMEPLLCLDGIKDVRTKLVCNLCKVKLGSCIRCSDGSCRTSFHPICAREAKNKLEIWGKFGCDDIELRAFCAKHSGAVGSSVKKEEKHAVVSDSPGITNQPAVLSVNKIKKLKIGCKNGNKVTFHIGAADAKSNHLGEPEAQGIVSKDAKAKVKLGLDEEKEVSDVAAPERTASEDVKTSYLLDLGLVLKKLVERGKVTPEQIASDIGISADSLASRLTDNHLGSELSCKILKWLRDHAYMDTQQKDLRAKVSSLVTSKDELGPVDSTDSVAVRDLEMSDVVPVKSVPPRRRTVGNIRFLKEDKVMSMWNDGLIGNGLSTNDGIEKEHVVEDCDASNKETISDGTGEIRDETTGFEDLLEETSPTSGSSRLKSDSPCDVERDGAEEGTSSGKSSLLDMDQDIPSCSSVNETSFFDRDVEPGRDSFVHPYVLKKLEEVQSWIMQGCEEQKFPSTERLTTAGVSCEEKKLRVGEAEGQGSNEANLSNLVKAKQMGVLDLFPEDEVEGEIIYLQQRLLGNAVEQKHHANQLLGKIVRNLPHEMDTLRKQRWDDVLDNQ*

Click here to download the sequence:
Link to NCBI Protein BLAST