Transcript Information: R_Transcript_58623.p1


Annotated TAIR IDAT1G19520.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)NFD5
Annotation TypeOrtholog
Chromosome Positionchr1:6760032-6762581 | Forward length=725
E-Value7.6E-232
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.816201193398
Replicate 215.035486315061
Replicate 318.409510864704
Condition 2: 8 Hour
Replicate 119.471104470761
Replicate 223.150461002244
Replicate 327.84272476517
Condition 3: 24 Hour
Replicate 127.302928934643
Replicate 225.762286867948
Replicate 327.885183089804


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_58623.p1 GENE.R_Transcript_58623~~R_Transcript_58623.p1 ORF type:complete len:708 (+),score=177.23,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|0.00085,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|2.8e-05,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|76,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|0.084,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0025,PPR|PF01535.16|46,PPR|PF01535.16|0.00038,PPR|PF01535.16|5.2,PPR|PF01535.16|0.45,PPR|PF01535.16|5.4e+03,PPR|PF01535.16|7.6,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|2.5e+02,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|5.7,PPR_1|PF12854.3|26,PPR_1|PF12854.3|3.6e-05,PPR_1|PF12854.3|39,PPR_1|PF12854.3|4.3e+02,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.63,TPR_19|PF14559.2|0.16,TPR_19|PF14559.2|25,TPR_19|PF14559.2|1.3,TPR_19|PF14559.2|1e+02,TPR_19|PF14559.2|6.6e+03,TPR_14|PF13428.2|5.9e+03,TPR_14|PF13428.2|15,TPR_14|PF13428.2|19,TPR_14|PF13428.2|6.7e+02,TPR_14|PF13428.2|9.1e+02,TPR_14|PF13428.2|2e+02 R_Transcript_58623:280-2403(+)
ATGAATCTCAGGCTCAAGCACTTGCTCTCTAGACAAACAATCTCAACTCTCACTCGCCTTAGCGCCATCATTACGTCATCATCATCTTGTTCTTCAATTAGTTCCTCAACTTCCATTTTCATTAATGCTCAAAATTCCGCAACAATACCATCATTTGCTAAACCCTTCCACTCCTCTCCAAACTACCTCAAATTCCCCCAATCCCAAACCCTAGCAGTTACTCAAGATTCCGATGAAGACGATGATGCTGAAATGAACGAGTTCCTGTCCCGATTTGTCCACCAAATGAGGTCGAACCTTGATGAATCGTACCCTCAGTGCGACAAACAAACGGTTGATGCTATGCTTGTGGTGATTGTTGAGAAGCTTGTGGCTCAATTAGAGAAGGGTGAGGCCTTGGAGGATATGGATGGCATGGAATTTAGTGACGATTTGTGGAAAACGGTGTTGGAGGTTAGCAATGTGGTGTACCAGGAAATGGAGAGAGAGAAAATGAAGGAGAAGATGAAGAAGTATTTGCAGTCTGATAGTGTCAAGGCTATGACTAGGTTTGCGAGTGAGGTGGGAGTTCGTGGGGATATGTTGAGGGAGCTCAGGTTTAAGTGGGCTCGTGAGGCCTTGGAGGAGACCGAGTTTTACGAGCATTTGGACCGACTGCGGAAGGAGGGGGAAGAAGAAGAAGAGCTAGCACAAGGAGAGAGTGAGGGAACTGAGAATGGCCGCGAAAGGGAAGGAGAGAGAGTGAAAGGGGGTTTTGATGGTGGTTTGCCAAAGCGGCATGGGAAGATCAAGTATAAGTTGTATGGGCTTGACATGTCCGGGCCTCAATGGAAAGAAGTGGCTGATAAGATTCATGAGGCTGGGGAGGTTATTTGGCCAGAAGAGGCAAAGCCGATTACTGGGAAATGTAAGCTGGTTACTGAGAAGATTCTTGGTTTGGGGAAGGATGATGATTTTTCACCCTTGCTTGATGAATGGGAGGAGCTATTGCAGCCTACCAGAGTCGATTGGGATAGCTTGCTTGATAACTTGAAGGGAAAGGACAGGAGTTTATACTTGAAGGTGGCAGAGCATGTCCTGAGCAAGCCTTCCTTCCAAACTGACATCCGGGACTACTCAAAGCTCATTGATATTCATGCTCAAGAAAATCGGATAGAGGATGTTGAAAGAATTCTTAAGAAGATGAGCGATAATGGCATGTCACCAGATATTATAATATTGACAGCTTTGATCCACATGTATAGCAAGGCTGGAAATCTTGATGAAGCAACAGAAGCTTTTGAAACACTGAGGAGTCAAGGTTTTAAACCAGCTTTACAGGTTTACAATTCAATGATAATTGCATATGTCAATGCTGGTAAGCCAAAGCAGGGCGAGGCACTGTTGAGAGAGCTAGAGACTAGGGATGCTAAACCTACAGAAGATATCTATATGGCGTTGCTGGGGGGGTTCGCTCAATGTGGTAATGTCACTGGAGCACAAAGAATAGATACCTGTATGAAGTTTGCAGGCTTTGAGCCAACTTTGGAGTCTTACTCTCTGCTTATTGAGGCATTTGGGAAATCTGGTAATACTAGTGATGCTAGAAACACTTTTGATTCCATGAGTAAAATGGGGTTCAAGCCCAATGACAGATGCACTGCGTTAATGATTTCTGCATATGACAAGAAGAATGAACTAGACAAGGCGTTGAAGCTTTTGTTGCAGCTGGAAAAAGGTGGGTTTGAACCTGGACTTTTAACCTACTGTGCTTTAGTGGATTGGCTGAGTAAGTTGCAGTTGGTTGATGAGGCTGAGCAAATTTTGGAGAAAATTGCTCAGCTGGGTGAAGTTCCTCCATTCAAGATCCAAGTAAGCCTTTGCGACATGTATGCACAGGCGCGCATGGAGAAGAAAGCACTTCAGGCCTTGGGAGTGCTGGAGGCCAAAAAGGAACTCTTAGATTCCCAGGACTTTGAGAGGATTATAACTGGACTTGTAAATGGTGGGTTTGTGCAGGATGCCCGGAGAATACACGGGTTAATGGAAGCCCGAGGGTTTACTGTACCAGATGGTATCCAAATAAAAATGATGTCAACCCAAGCCTTTGGACGTAGTGGTAGCAATAGACCAGAAAACCGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_58623.p1 GENE.R_Transcript_58623~~R_Transcript_58623.p1 ORF type:complete len:708 (+),score=177.23,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|0.00085,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|2.8e-05,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|76,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|0.084,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0025,PPR|PF01535.16|46,PPR|PF01535.16|0.00038,PPR|PF01535.16|5.2,PPR|PF01535.16|0.45,PPR|PF01535.16|5.4e+03,PPR|PF01535.16|7.6,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|2.5e+02,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|5.7,PPR_1|PF12854.3|26,PPR_1|PF12854.3|3.6e-05,PPR_1|PF12854.3|39,PPR_1|PF12854.3|4.3e+02,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.63,TPR_19|PF14559.2|0.16,TPR_19|PF14559.2|25,TPR_19|PF14559.2|1.3,TPR_19|PF14559.2|1e+02,TPR_19|PF14559.2|6.6e+03,TPR_14|PF13428.2|5.9e+03,TPR_14|PF13428.2|15,TPR_14|PF13428.2|19,TPR_14|PF13428.2|6.7e+02,TPR_14|PF13428.2|9.1e+02,TPR_14|PF13428.2|2e+02 R_Transcript_58623:280-2403(+)
MNLRLKHLLSRQTISTLTRLSAIITSSSSCSSISSSTSIFINAQNSATIPSFAKPFHSSPNYLKFPQSQTLAVTQDSDEDDDAEMNEFLSRFVHQMRSNLDESYPQCDKQTVDAMLVVIVEKLVAQLEKGEALEDMDGMEFSDDLWKTVLEVSNVVYQEMEREKMKEKMKKYLQSDSVKAMTRFASEVGVRGDMLRELRFKWAREALEETEFYEHLDRLRKEGEEEEELAQGESEGTENGREREGERVKGGFDGGLPKRHGKIKYKLYGLDMSGPQWKEVADKIHEAGEVIWPEEAKPITGKCKLVTEKILGLGKDDDFSPLLDEWEELLQPTRVDWDSLLDNLKGKDRSLYLKVAEHVLSKPSFQTDIRDYSKLIDIHAQENRIEDVERILKKMSDNGMSPDIIILTALIHMYSKAGNLDEATEAFETLRSQGFKPALQVYNSMIIAYVNAGKPKQGEALLRELETRDAKPTEDIYMALLGGFAQCGNVTGAQRIDTCMKFAGFEPTLESYSLLIEAFGKSGNTSDARNTFDSMSKMGFKPNDRCTALMISAYDKKNELDKALKLLLQLEKGGFEPGLLTYCALVDWLSKLQLVDEAEQILEKIAQLGEVPPFKIQVSLCDMYAQARMEKKALQALGVLEAKKELLDSQDFERIITGLVNGGFVQDARRIHGLMEARGFTVPDGIQIKMMSTQAFGRSGSNRPENR*

Click here to download the sequence:
Link to NCBI Protein BLAST