Transcript Information: R_Transcript_59203.p1


Annotated TAIR IDAT3G55530.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)SDIR1
Annotation TypeOrtholog
Chromosome Positionchr3:20595300-20597188 | Reverse length=273
E-Value5.8E-104
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.140533863733
Replicate 27.7764075615919
Replicate 311.135219664796
Condition 2: 8 Hour
Replicate 14.1943379770744
Replicate 27.8677176848616
Replicate 36.8068539826451
Condition 3: 24 Hour
Replicate 19.5657530115434
Replicate 26.4327838430851
Replicate 38.9172130205878


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59203.p1 GENE.R_Transcript_59203~~R_Transcript_59203.p1 ORF type:5prime_partial len:216 (+),score=36.32,zf-RING_2|PF13639.2|1.2e-11,zf-RING_11|PF17123.1|1.4e-08,zf-RING_11|PF17123.1|5.9e+03,zf-C3HC4|PF00097.21|5.3e-07,zf-C3HC4_2|PF13923.2|2.3e-06,zf-rbx1|PF12678.3|7.3e+03,zf-rbx1|PF12678.3|2.7e-06 R_Transcript_59203:2-649(+)
CTCTGGCTAGTCTTCGGCTTCTTTTTGATGGCCACCAGTTTACGTATGTATGCAACATGTCAACAACTTCAAGCTCAGGCACAAGCACATGCTGTAGCCGCCACTGGCCTACTTCGTCACACTGAGCTCCGGTTGCATGTGCCTCCATCAATTGCATTTGCATCTAGAGGACGCCTCCAGGGCCTCAGGCTGCAGCTTGCGCTGCTAGACCGGGAATTCGATGATCTAGATTATGAAACTTTAAGAGCACTGGATGCTGACAATGTTCCTACAGTTCCCTCAATGAGTGATGAGGAGATAAATGCTCTACCAGTGCACAAGTATAAGGTTAGCAGTTCCCAAAGTGATGCAGGAGCAGTACAGCAGGCATCATCGTCATCAACGTCTCCTCAGAAGCAGCATGATATTTCCATCAACTTAGGAAGTTCTAAGGGGACCTCCGAAGATGAACTAACTTGTAGTGTTTGCTTGGAGCAAGTAGCTGTGGGCGAACTCATTCGTAGCTTGCCATGTTTACACAAGTACCATGCTAACTGCATTGATCCGTGGCTGAGACAGCAGGGAACATGCCCTGTGTGTAAATTCAAGGTCGGAGCTGGCTGGCATGAAGACGGTCAGGGTGGAGTTGATGCTTCGTTCATTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59203.p1 GENE.R_Transcript_59203~~R_Transcript_59203.p1 ORF type:5prime_partial len:216 (+),score=36.32,zf-RING_2|PF13639.2|1.2e-11,zf-RING_11|PF17123.1|1.4e-08,zf-RING_11|PF17123.1|5.9e+03,zf-C3HC4|PF00097.21|5.3e-07,zf-C3HC4_2|PF13923.2|2.3e-06,zf-rbx1|PF12678.3|7.3e+03,zf-rbx1|PF12678.3|2.7e-06 R_Transcript_59203:2-649(+)
LWLVFGFFLMATSLRMYATCQQLQAQAQAHAVAATGLLRHTELRLHVPPSIAFASRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTVPSMSDEEINALPVHKYKVSSSQSDAGAVQQASSSSTSPQKQHDISINLGSSKGTSEDELTCSVCLEQVAVGELIRSLPCLHKYHANCIDPWLRQQGTCPVCKFKVGAGWHEDGQGGVDASFIV*

Click here to download the sequence:
Link to NCBI Protein BLAST