Transcript Information: R_Transcript_59272.p1


Annotated TAIR IDAT4G23800.1
Annotated Gene NameHMG (high mobility group) box protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:12390228-12392516 | Forward length=456
E-Value2.7E-197
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.777267156279
Replicate 246.325170759769
Replicate 349.176766029835
Condition 2: 8 Hour
Replicate 127.012184346564
Replicate 220.985510140636
Replicate 324.706358899971
Condition 3: 24 Hour
Replicate 168.736768068662
Replicate 254.700542883376
Replicate 366.488245785


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59272.p1 GENE.R_Transcript_59272~~R_Transcript_59272.p1 ORF type:complete len:504 (+),score=188.30,HMG_box|PF00505.15|1.4e+03,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.1e-18,HMG_box|PF00505.15|5.9e+03,HMG_box|PF00505.15|2.1e-12,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.5e-18,HMG_box_2|PF09011.6|8.1e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|5.5e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|3.8e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|4.9e-12 R_Transcript_59272:269-1780(+)
ATGGCTGCCACTGCAACTTCCAATCTCCCCATCGTAATTGACCCTGTTCCGGCAAAGAAGGGGAGGAGCAGAAAGGCATTGAAAGAGAAAAACCCATCAACAAATGAAGCAAATATTCTGGCCGGAAAACCCCTTGAGACCTCACAATCTCCGGCCATAGATTCCGAACTCAGCAAGGAGAACCATGAGAGCCTCTCACACCCCCGGTCGGAGAAGAAGAAATCGAAGAAATCCAAGGCAAAGCAAACCGAACCCTCAATTAATTTTGAGAACGAAATGCAAGAAATGCAAGAAATGTTGGAGAAATTGAAGATTGAGAAGGAGAAGACTGAGGAAATGTTGAAGGAGAAAGATGACATGTTGAAGCAGAAAGAGGAGGAGATCGAAACTCGGGATAAAGAGCAGCAAAAGCTTCAGGTTGAGCTCAAGAAACTCCAGAAGATGAAGGAGTTTAAACCCACCATGACTTTGCCTATCATCCAATCATTGAAAGACAAAGAATTGGAGAAGAAAGACAAGAAGAAGAAGGATTGCCCTGAAAGGAAAAGGCCAGCTTCAGCCTATGCTTTATGGTGCAAAGAACAATGGAGAGAGATCAAGAACGAAAATCCAGATGCGGATTTTAAAGAAGTGTCAAACATAATGGGCACCAAGTGGAAGACTCTTAGCTCAGAAGAGAAGAAGCCATATGAAGAGAAGTACCAGGCGGATAAGGAAGCTTATCTACAAATTGCAAGCAAAGAAAAGCGTGAGACTGAAGCTATGAAACTGTTAGAGGAAGAGCACAAACAAAAGACTGCAATGGAGCTTCTGGATCAGTACCTACAGTTCAAACAAGAAGCAGAGAAGGAGACCAAGAAAACAAAGAAGGAGAGGGACCCATCGAAGCCTAAGCAGCCAGTCAGTGCTTTCTTCTTGTACTCGAACGAAAGGCGTGCTGCTTTGATTGGTGAGGGCAAGAATTTGCTCGAGGCCTCAAAGGTAATGAGTGAAGAATGGAAAAGCATGACAGAGGAGCAAAAATTGCCTTACGAAAAGATTGCAAAGGAAAACAAGGAGAAGTACCAGCAGGACATGGAGGTGTACAAGCAGAAGAAAGAGGAAGAAGCTGCCACCATCAAGAAAGAAGAGGAAGAAATTGTGAAACTTCAAAAAGCTGAGGCTTTTCAGCTGCTTAAGAAGAAAGAGAAGACTGAAAATATCATCAAGAAATCTAAGGACATGAAAAAGAAGCAAAAGGGTGAGAAGAAAGCTGATCCAAACAAGCCCAAGAGGCCTCTTTCTTCTTTCTTCCTGTTCAGCAAGGAAGAAAGGAAGAATTTGCTCCAAGAGCGGCCTGGTATCAACAACTCCACTGTCAATGCACTCCTTTCATTGAAATGGAAGGAATTAAGTGATGAGGAGAAGAAAATGTGGAACCAGAAGGCAGCCGAGGGCATGGAAGCTTACAAGAAAGAGCTGGAAGAATACAACAAGCAATTGGAAGCCAAGGCAGGCAAATCAGAGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59272.p1 GENE.R_Transcript_59272~~R_Transcript_59272.p1 ORF type:complete len:504 (+),score=188.30,HMG_box|PF00505.15|1.4e+03,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.1e-18,HMG_box|PF00505.15|5.9e+03,HMG_box|PF00505.15|2.1e-12,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|2.5e-18,HMG_box_2|PF09011.6|8.1e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|5.5e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|3.8e-13,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|4.9e-12 R_Transcript_59272:269-1780(+)
MAATATSNLPIVIDPVPAKKGRSRKALKEKNPSTNEANILAGKPLETSQSPAIDSELSKENHESLSHPRSEKKKSKKSKAKQTEPSINFENEMQEMQEMLEKLKIEKEKTEEMLKEKDDMLKQKEEEIETRDKEQQKLQVELKKLQKMKEFKPTMTLPIIQSLKDKELEKKDKKKKDCPERKRPASAYALWCKEQWREIKNENPDADFKEVSNIMGTKWKTLSSEEKKPYEEKYQADKEAYLQIASKEKRETEAMKLLEEEHKQKTAMELLDQYLQFKQEAEKETKKTKKERDPSKPKQPVSAFFLYSNERRAALIGEGKNLLEASKVMSEEWKSMTEEQKLPYEKIAKENKEKYQQDMEVYKQKKEEEAATIKKEEEEIVKLQKAEAFQLLKKKEKTENIIKKSKDMKKKQKGEKKADPNKPKRPLSSFFLFSKEERKNLLQERPGINNSTVNALLSLKWKELSDEEKKMWNQKAAEGMEAYKKELEEYNKQLEAKAGKSES*

Click here to download the sequence:
Link to NCBI Protein BLAST