Transcript Information: R_Transcript_59279.p1


Annotated TAIR IDAT4G23800.1
Annotated Gene NameHMG (high mobility group) box protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:12390228-12392516 | Forward length=456
E-Value2.5E-117
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.61354490604097
Replicate 20.52931849788987
Replicate 30.38498718648996
Condition 2: 8 Hour
Replicate 10.20576357098525
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.18533831000485
Replicate 30.24524038864871


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59279.p1 GENE.R_Transcript_59279~~R_Transcript_59279.p1 ORF type:complete len:357 (+),score=111.09,HMG_box|PF00505.15|9.3e+02,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|1.7e-18,HMG_box|PF00505.15|2.9e+03,HMG_box|PF00505.15|0.03,HMG_box_2|PF09011.6|4.9e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|1.9e-13,HMG_box_2|PF09011.6|0.4 R_Transcript_59279:269-1339(+)
ATGGCTGCCACTGCAACTTCCAATCTCCCCATCGTAATTGACCCTGTTCCGGCAAAGAAGGGGAGGAGCAGAAAGGCATTGAAAGAGAAAAACCCATCAACAAATGAAGCAAATATTCTGGCCGGAAAACCCCTTGAGACCTCACAATCTCCGGCCATAGATTCCGAACTCAGCAAGGAGAACCATGAGAGCCTCTCACACCCCCGGTCGGAGAAGAAGAAATCGAAGAAATCCAAGGCAAAGCAAACCGAACCCTCAATTAATTTTGAGAACGAAATGCAAGAAATGCAAGAAATGTTGGAGAAATTGAAGATTGAGAAGGAGAAGACTGAGGAAATGTTGAAGGAGAAAGATGACATGTTGAAGCAGAAAGAGGAGGAGATCGAAACTCGGGATAAAGAGCAGCAAAAGCTTCAGGTTGAGCTCAAGAAACTCCAGAAGATGAAGGAGTTTAAACCCACCATGACTTTGCCTATCATCCAATCATTGAAAGACAAAGAATTGGAGAAGAAAGACAAGAAGAAGAAGGATTGCCCTGAAAGGAAAAGGCCAGCTTCAGCCTATGCTTTATGGTGCAAAGAACAATGGAGAGAGATCAAGAACGAAAATCCAGATGCGGATTTTAAAGAAGTGTCAAACATAATGGGCACCAAGTGGAAGACTCTTAGCTCAGAAGAGAAGAAGCCATATGAAGAGAAGTACCAGGCGGATAAGGAAGCTTATCTACAAATTGCAAGCAAAGAAAAGCGTGAGACTGAAGCTATGAAACTGTTAGAGGAAGAGCACAAACAAAAGACTGCAATGGAGCTTCTGGATCAGTACCTACAGTTCAAACAAGAAGCAGAGAAGGAGACCAAGAAAACAAAGAAGGAGAGGGACCCATCGAAGCCTAAGCAGCCAGTCAGTGCTTTCTTCTTGTACTCGAACGAAAGGCGTGCTGCTTTGATTGGTGAGGGCAAGAATTTGCTCGAGGTAAACAAACTAAGGGGATTGCTTGATAATGTCAATTTAGTTGGACTTATATTACGAATTGCAATGATCATCTTTTCAGGCCTCAAAGGTAATGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59279.p1 GENE.R_Transcript_59279~~R_Transcript_59279.p1 ORF type:complete len:357 (+),score=111.09,HMG_box|PF00505.15|9.3e+02,HMG_box|PF00505.15|1.6e+04,HMG_box|PF00505.15|1.7e-18,HMG_box|PF00505.15|2.9e+03,HMG_box|PF00505.15|0.03,HMG_box_2|PF09011.6|4.9e+03,HMG_box_2|PF09011.6|1.6e+04,HMG_box_2|PF09011.6|1.9e-13,HMG_box_2|PF09011.6|0.4 R_Transcript_59279:269-1339(+)
MAATATSNLPIVIDPVPAKKGRSRKALKEKNPSTNEANILAGKPLETSQSPAIDSELSKENHESLSHPRSEKKKSKKSKAKQTEPSINFENEMQEMQEMLEKLKIEKEKTEEMLKEKDDMLKQKEEEIETRDKEQQKLQVELKKLQKMKEFKPTMTLPIIQSLKDKELEKKDKKKKDCPERKRPASAYALWCKEQWREIKNENPDADFKEVSNIMGTKWKTLSSEEKKPYEEKYQADKEAYLQIASKEKRETEAMKLLEEEHKQKTAMELLDQYLQFKQEAEKETKKTKKERDPSKPKQPVSAFFLYSNERRAALIGEGKNLLEVNKLRGLLDNVNLVGLILRIAMIIFSGLKGNE*

Click here to download the sequence:
Link to NCBI Protein BLAST