Transcript Information: R_Transcript_59542.p1


Annotated TAIR IDAT5G55060.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22342079-22346400 | Forward length=662
E-Value4.7E-237
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.43089582261
Replicate 210.105977930258
Replicate 311.979960466953
Condition 2: 8 Hour
Replicate 112.383655835388
Replicate 214.457466707663
Replicate 315.830499492205
Condition 3: 24 Hour
Replicate 115.107292687196
Replicate 211.693089842849
Replicate 313.019410546517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59542.p1 GENE.R_Transcript_59542~~R_Transcript_59542.p1 ORF type:complete len:696 (+),score=151.00,Rab3-GTPase_cat|PF13890.2|8.5e-55 R_Transcript_59542:239-2326(+)
ATGGAGGGAGAGTCGATAGTTTCCAAGGCAAGGACGGCATTTCATTCAGCGGCTGCTAAAGCCGAAAGAGTTTTCATCGATTTTAAATCCGATCTTCGAGATTCAGATGAGCATCCTTGGAAGGGAGGTGGTTCAGGTGCAGGTCAATTTGAGAGTGTGTTGCCTTCTGAGGCTGAACAAAAGAGTTCAAATGAGCCGAAGCAATTTCGGTGGAAGCCACCAAGCATAGGGACAAAGCAGGAATGGCACGAGAGACTACGGAATATTGGAAAAGGTAGAAAGGGAACTGAAGACGCAGAGAAGGTTGAGATTCCAAAGATGTCCTTCCCAATATATGATGAAAATTTATACCTATATAATGAAAAATGTGCTCTTGAGGCAAAGGGTTGTGATACAACTTCGCCTACAGATAATTCTGATGCCACCAATAAAGATACTATCCCGCCTGTATCGGTGTTGAAGCAACTGGCAATTGCCATCGAATCAGAAAGGAATTACCGGACAGTGAAGGAATTTCTCACATCATCTAAAAGTTCTTCACCTGTTCGTGAAAGGGCAAGCTTGGGCATCTCTGCAGTCAAGTCATTAGTCCTCCGGGGGAAGGAGGAGAAAGTTACCTCCGAGTTGGGTGACGATGAAGTTTGGTCCTTTATCCAGTCTATACTCGATGCTGAGGGACTTACTCCTAGTAGGAAGGTTGGCTTTCTTTTGGAAACACTTCCTGGCTTAATAACTTTGCCAAGAGACATTCATGGTGCTCCAGCTGAAAGCTTGGTTGTTAAAGTATCTGAAGTCATTGGAAGCTTCAAAACGCTGCAGAAGATGGCTGTATTTTGGTGCAGGTTTGTTGCTGAAATCAGAAGACTTTGGTTGGAAGAGCAATACGTACCTGGCATTCCTGTCGAGGAATTACCGGATTTAAATTGCTGTCTACTGTATCAGCAGTTCCAACTTATAAATTGTTGTGTTTCTCGGAAGAAGCACCGTGCCATAGCTACCGATTCACTAGAATCTTTAATTAGAGAAGCTGGTTGTGATGCTGACGGCCTGCCTTCATCAATAGAAAGAATAACTTCAGGTTCTTTTCCTCATGCTAAAACACTCACAGGGGAAGTTGTTCTACGGTTAGGAGCAAGTCAGCAGGCTGAAAATATGACTTTGTTGGAAACTGGAGAGCCCATATATGCTCCTGTGACACAGGAAGGACCCTTACTCACAGAAGATCTTGCCCGAGAAGCTGAAGAATTTGTGCTGCGGACAGGAAGTGTTGGTGCTGGTTGTTCCCAACTTCTTTCTGACATGCAGGCTTTTAAGGCAGCAAATCCTGGATGTATTCTTGAAGACTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGAGCTCGAGAATGACAATGATTCTGATGTAAGTTCTGGAGGAGGTGATTCAACTTCTTCAAGAGGTCGATTAAGTTCCCGTATGCGCAAAGCAGGTAATTTGTGGCGTGAACTCTGGGAGACTGCAAAACCTGTCCCTGCTGTGAGACAAGCACCCCTATTTGACGAGGACTTGGCAGTGGAAGGTGTATTCCATATATTAGAAGAAATATCTCCTTCTCAGCTATTCAGTCAGCTTTTCCTGTCTCTGCTTGGCTTTGGATTTGTGATTGCCGAGGCTAAGCTCTCCACAGATGAGAACATAGTAAAACTGTTCTACGAATGTAAAGATTATGTAGTTGCGTCATGTCAAGGCCAGTCCTGGATGGAGAAAATTGATGATCTTTGTCAGATTTACGAAACAGTGGAAGTAATGTTTGTCCGCCCAGAGGATGTCATGAAGATGATGAAGCAACCTGAAGATGCAAATACCTCTGAGGAGCCTAAACATCGGTTTAAGAAGTTAACCCAAATATTTGGCCGCAAAAATAAGTCAAAAAAATCGACCTCAGAGGAGCAGAACACAGAAGATAATCAAACCCGTCAGCCATTTTCAAATTTTTTTGATAGCAAGTCATCCTTGTTCGCAAAGAAGCCCCCTAAGCCTGAAAGCACAACACTCCAAGCCAACAAGCCCCCTAGTCTAGATGAAAATGAATGGACAGTTGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59542.p1 GENE.R_Transcript_59542~~R_Transcript_59542.p1 ORF type:complete len:696 (+),score=151.00,Rab3-GTPase_cat|PF13890.2|8.5e-55 R_Transcript_59542:239-2326(+)
MEGESIVSKARTAFHSAAAKAERVFIDFKSDLRDSDEHPWKGGGSGAGQFESVLPSEAEQKSSNEPKQFRWKPPSIGTKQEWHERLRNIGKGRKGTEDAEKVEIPKMSFPIYDENLYLYNEKCALEAKGCDTTSPTDNSDATNKDTIPPVSVLKQLAIAIESERNYRTVKEFLTSSKSSSPVRERASLGISAVKSLVLRGKEEKVTSELGDDEVWSFIQSILDAEGLTPSRKVGFLLETLPGLITLPRDIHGAPAESLVVKVSEVIGSFKTLQKMAVFWCRFVAEIRRLWLEEQYVPGIPVEELPDLNCCLLYQQFQLINCCVSRKKHRAIATDSLESLIREAGCDADGLPSSIERITSGSFPHAKTLTGEVVLRLGASQQAENMTLLETGEPIYAPVTQEGPLLTEDLAREAEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTELENDNDSDVSSGGGDSTSSRGRLSSRMRKAGNLWRELWETAKPVPAVRQAPLFDEDLAVEGVFHILEEISPSQLFSQLFLSLLGFGFVIAEAKLSTDENIVKLFYECKDYVVASCQGQSWMEKIDDLCQIYETVEVMFVRPEDVMKMMKQPEDANTSEEPKHRFKKLTQIFGRKNKSKKSTSEEQNTEDNQTRQPFSNFFDSKSSLFAKKPPKPESTTLQANKPPSLDENEWTVV*

Click here to download the sequence:
Link to NCBI Protein BLAST