Transcript Information: R_Transcript_59732.p1


Annotated TAIR IDAT1G44446.1
Annotated Gene NamePheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
Annotated Gene Symbol(s)CH1, ATCAO, CAO
Annotation TypeOrtholog
Chromosome Positionchr1:16848664-16851152 | Reverse length=536
E-Value9.3E-256
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7420648882111
Replicate 21.0043788354038
Replicate 32.2437123385753
Condition 2: 8 Hour
Replicate 11.4501879012036
Replicate 21.3243346876329
Replicate 32.6462484731316
Condition 3: 24 Hour
Replicate 12.8762628645187
Replicate 22.1603100963436
Replicate 33.4402087093301


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59732.p1 GENE.R_Transcript_59732~~R_Transcript_59732.p1 ORF type:3prime_partial len:439 (+),score=82.18,Rieske|PF00355.22|1.4e-21 R_Transcript_59732:1156-2469(+)
ATGACTGCCGTTGCTACTGCTTCTGCTCTTTCTCTTCCTATCTCTCTTAGCCGCCCTTCTAAGCTTATCCCCAAAAAGGTTAGAGGAAGCATTGGAGTGTTTGCTGTATTTGGAGAAGATGGAGGGTCACTGGATAAAAGGAGCATCTGGGCCCCACTATTCGACGTGGAGGATCCGAGACCGAGAACTCCACTGAACAAAGGGAAGTTTCTGGATGTGAATCAAGCACTGGAAGTAGCAAGATTTGACATTCAATACTTGGACTGGCGAGCACGGCAAGATGTTCTTGCAATTATGCTCCTACATGAAAAGGTTGTGGAGGTTCTAAACCCGCTTGCGCGGGACTACAAATCAATTGGCACGATGAAAAAGGAACTAGCAGAGCTGCAAGAAGAGCTCACACAAGCTCATAAACAGGTCCATATATCTGAAACACGGGTCAATGCCGCTTTAGATAAGCTAGCTTACATGGAAGAACTCGTTAATGATAGGTTGTTGCAAGACAGAAGTTCAACTGTAACTGAGGAAGCCCCATCCTCCACGAGCACCTCCACACAATCCTCGGAAGGTCTTAAGAAGAAGATGCCGCGTAAAAGTTTAAATGTATCAGGTCCTGTAAAATCTTATCACCCCAGCTTGAAGAATTTTTGGTATCCTGTCGCTTTTTCTTCAGACTTGAAGGATGACACTATGATACCAATAGAATGCTTTGAAGAACCGTGGGTCATTTTTCGAGGCAAAGATGGGAAACCTGGGTGTGTTCAGAACACTTGTGCACATAGAGCATGCCCTCTTCATCTTGGTTCCGTGAATGAGGGCCGCATCCAATGCCCCTATCATGGATGGGAGTATTCAACAGATGGAAAATGTGAGAAAATGCCATCAACAAGGTTACTTGATGTCAGGTTAAAATCAGTACCATGCTTTGAGCAGGAAGGAATGATCTGGATTTGGCCTGGAAGTGATCCTCCAGCTGCCACCCTCCCTTCATTGCTGCCGCCTCAAGGGTTTGTGATTCATGCAGAGATAGTAATGGAGCTTCCTGTTGAGCATGGGCTTCTACTGGATAATCTTCTGGACCTTGCACATGCACCCTTCACTCACACATCCACATTTGCAAAAGGGTGGGCTGTTCCGAGCTTGGTCAAATTCTTGACACCGGGATCTGGACTTCAGGGATACTGGGACCCTTATCCCATAGACATGGAGTTCAGACCGCCTTGTATGGTGCTTTCAACAATCGGGATCTCAAAGCCAGGAAAACTGGAGGGGCAGAGCACCGAGCAGTGTGCAACCCATCTTCACCAGCTTCAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59732.p1 GENE.R_Transcript_59732~~R_Transcript_59732.p1 ORF type:3prime_partial len:439 (+),score=82.18,Rieske|PF00355.22|1.4e-21 R_Transcript_59732:1156-2469(+)
MTAVATASALSLPISLSRPSKLIPKKVRGSIGVFAVFGEDGGSLDKRSIWAPLFDVEDPRPRTPLNKGKFLDVNQALEVARFDIQYLDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELTQAHKQVHISETRVNAALDKLAYMEELVNDRLLQDRSSTVTEEAPSSTSTSTQSSEGLKKKMPRKSLNVSGPVKSYHPSLKNFWYPVAFSSDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLDVRLKSVPCFEQEGMIWIWPGSDPPAATLPSLLPPQGFVIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWAVPSLVKFLTPGSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTEQCATHLHQLH

Click here to download the sequence:
Link to NCBI Protein BLAST