Transcript Information: R_Transcript_59733.p1


Annotated TAIR IDAT1G44446.1
Annotated Gene NamePheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
Annotated Gene Symbol(s)CH1, ATCAO, CAO
Annotation TypeOrtholog
Chromosome Positionchr1:16848664-16851152 | Reverse length=536
E-Value8.3E-128
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.1991910170929
Replicate 24.8280262989348
Replicate 33.6748776892223
Condition 2: 8 Hour
Replicate 12.0950472682135
Replicate 23.7068841554907
Replicate 35.2416415695235
Condition 3: 24 Hour
Replicate 17.1206033112665
Replicate 23.302391705541
Replicate 36.5546067511564


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_59733.p1 GENE.R_Transcript_59733~~R_Transcript_59733.p1 ORF type:5prime_partial len:187 (+),score=25.53,PaO|PF08417.8|1.3e-15 R_Transcript_59733:1-561(+)
CTTCCTGTTGAGCATGGGCTTCTACTGGATAATCTTCTGGACCTTGCACATGCACCCTTCACTCACACATCCACATTTGCAAAAGGGTGGGCTGTTCCGAGCTTGGTCAAATTCTTGACACCGGGATCTGGACTTCAGGGATACTGGGACCCTTATCCCATAGACATGGAGTTCAGACCGCCTTGTATGGTGCTTTCAACAATCGGGATCTCAAAGCCAGGAAAACTGGAGGGGCAGAGCACCGAGCAGTGTGCAACCCATCTTCACCAGCTTCATGTTTGTTTACCATCTTCAAAGCAGAAAACAAGGCTGCTGTATAGAATGTCATTAGATTTCGCTCCCATATTGAAGCATGTTCCTTTCACACAATATTTGTGGAAGCATTTTGCCGAAAAGGTTTTGAACGAAGATCTAAGACTCGTTCTTGGACAACAAGAACGGATGATAAATGGAGCGAATGTTTGGAACTGGCCGGTAGCCTATGACAAACTCGGGTTCAGATATAGGCTCTGGAGAGAGGCTGTGGAGCGAGGAGAGAAACGGTTACCTTTTAGCCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_59733.p1 GENE.R_Transcript_59733~~R_Transcript_59733.p1 ORF type:5prime_partial len:187 (+),score=25.53,PaO|PF08417.8|1.3e-15 R_Transcript_59733:1-561(+)
LPVEHGLLLDNLLDLAHAPFTHTSTFAKGWAVPSLVKFLTPGSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTEQCATHLHQLHVCLPSSKQKTRLLYRMSLDFAPILKHVPFTQYLWKHFAEKVLNEDLRLVLGQQERMINGANVWNWPVAYDKLGFRYRLWREAVERGEKRLPFSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST