Transcript Information: R_Transcript_60416.p1


Annotated TAIR IDAT3G16500.1
Annotated Gene Namephytochrome-associated protein 1
Annotated Gene Symbol(s)PAP1, IAA26
Annotation TypeOrtholog
Chromosome Positionchr3:5612801-5614208 | Reverse length=269
E-Value6.3E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1185.85749745606
Replicate 2110.72358423954
Replicate 3128.9611359695
Condition 2: 8 Hour
Replicate 1203.19209475559
Replicate 2242.57232870258
Replicate 3237.77607061291
Condition 3: 24 Hour
Replicate 1128.74129467469
Replicate 275.182843842465
Replicate 3109.8617663428


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_60416.p1 GENE.R_Transcript_60416~~R_Transcript_60416.p1 ORF type:complete len:362 (+),score=90.98,AUX_IAA|PF02309.12|4.9e-72 R_Transcript_60416:1047-2132(+)
ATGAGTGAGAGTTGTCCAAAATTGCTGGATTTAATACCAAAAAATAAGAGAGAATGGGTGTTCAATAATGGTGAAGAAAAGGGAAAAGGGTCTTGTTCTTCTGGTTCTTGTGAGGAGAGCAAAACACTTGAGCTTAGGCTTGGTCTTCCTGGTGATGAGGGTTGGTCAGCCAAACACAACCTCAAGAACAACCCCTTTAAAGAAAGAGATGAATCACTTTTCTCTCTAAGATACTTCTCTGACCATAAACAGAATAGCCATCAACAACAACCGGCATGGCCTTGTTCAGGTTACCAAGCACAAACACAACAACAACAGCAACAATTACAAAAACAACAACAACAACAAAACACAAATTCTGCATTTCTCCACCACCCTCATAGTCATCAGTACCAAACAGGTCCTAACAAGGGGTTGGGTGTTATGGGTAAAGAATCATCACAGCCCTGTTGCACTAGAATAGTAGACTTGCAGAATGCAGAAAAGAAGGGAGCATTTCCGCCAGCTTCTGCCAATACAGCTGTGCCCAACACTTCTCAAAAAAGAGCTGCTCCTGCTCCAGTTGTGGGATGGCCTCCAGTTAGGTCCTTCAGAAAGAACCTTGCTAGTACTAGTTCAGCAAAGCCGGTCTCTGAACCGCAGAGTGCGATCCCAAGCAAGCCTGTGAATGAGAAGCCAAGTGGTGAAAGCTCCCACAAGGGTTTGTTTGTGAAGATCAACATGGATGGTGTTCCTATTGGAAGGAAAGTGGACCTAAGCGCATATAACAGCTATGGCAAGCTCTCTACTGCTGTTGATGAGCTCTTTAGAGGGCTTCTTGCAGCTCAAGGGGATTCTTCTGCTGGTGGGATCGATAACAAACAAGAAGAGCAGAAACCAATTACAGGATTATTGGACAGAAGTGGGGAATATACTCTGGTTTATGAAGATAACGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGGACATGTTTGTGTCCACTGTCAAGAGACTGCGGGTGTTGAAGAGTTCTGACCTACCCACTTTAAGCCTAGGTGGCAGTAAGGAAGGCAAGGCGCTGGCTGAGAGTGCATCCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_60416.p1 GENE.R_Transcript_60416~~R_Transcript_60416.p1 ORF type:complete len:362 (+),score=90.98,AUX_IAA|PF02309.12|4.9e-72 R_Transcript_60416:1047-2132(+)
MSESCPKLLDLIPKNKREWVFNNGEEKGKGSCSSGSCEESKTLELRLGLPGDEGWSAKHNLKNNPFKERDESLFSLRYFSDHKQNSHQQQPAWPCSGYQAQTQQQQQQLQKQQQQQNTNSAFLHHPHSHQYQTGPNKGLGVMGKESSQPCCTRIVDLQNAEKKGAFPPASANTAVPNTSQKRAAPAPVVGWPPVRSFRKNLASTSSAKPVSEPQSAIPSKPVNEKPSGESSHKGLFVKINMDGVPIGRKVDLSAYNSYGKLSTAVDELFRGLLAAQGDSSAGGIDNKQEEQKPITGLLDRSGEYTLVYEDNEGDRMLVGDVPWDMFVSTVKRLRVLKSSDLPTLSLGGSKEGKALAESASK*

Click here to download the sequence:
Link to NCBI Protein BLAST