Transcript Information: R_Transcript_60433.p1


Annotated TAIR IDAT1G80170.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30153646-30155683 | Reverse length=444
E-Value1.6E-182
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5890733491249
Replicate 25.17845974393
Replicate 35.8037249963346
Condition 2: 8 Hour
Replicate 14.6665886110221
Replicate 24.4120125605927
Replicate 34.7617453869625
Condition 3: 24 Hour
Replicate 17.0005869573268
Replicate 25.8846991210285
Replicate 35.3492372441072


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_60433.p1 GENE.R_Transcript_60433~~R_Transcript_60433.p1 ORF type:complete len:446 (+),score=65.67,Glyco_hydro_28|PF00295.13|4.9e-93,Pectate_lyase_3|PF12708.3|2e-06 R_Transcript_60433:316-1653(+)
ATGAAATCCCCCATTAATTCAACCTCTTGCTGTTCAGATTGTGTTGTTAAATTGTTGGTCATTATTACTATAAGTGTGCTGTTGAATGTTAGTAACACAGTGGCATTTGAGTCTTTTTTGAAGCTCCCATTATCTGGGTTCTCTAGAAACAGACCCAGAATTGAAAGGGTTGTTCATGTTAATGCCTATGGAGCTGCAGGTGATGGGATTCATGATGATACTGAGGCTTTCAGAAATGCATGGAAAGTGGCATGTTCTTTGTCTCAGCGATCAACAATCGTCATTCCAGAGGGATACACTTATAAGGTGCAACCAATTGATTTTGCTGGATGTCAAGCCAGGGTGACTCTAAGGATTCTGGGTGCGATTGTTGCTCCTAAACATCCTGAAGCATGGCTCGGTTTGAACCCTCGCAAGTGGCTTTATTTCCATAGTGTAGAGCATCTAACTCTAGAAGGTGGAGGGACAATCAATGGGATGGGTGAGGAGTGGTGGAAACTGTCTTGCAAGTTCAATGCAACAATTCCTTGTCATCATGCTCCTACGGCTATCACTTTTCACAGGTGCAAGGATTTAACTGTCACAAATATCAATATCGTTGACAGTCAACAAACACACATGTCTTTCACTAATTGCATCGGGGTTATGGTGTCCAATGTCACAATTACAGCACCAGCTGAAAGTCCTAATACAGATGGAATCCACATAAGTGCGTCCACTCATGTTGAAGTAATAGATACTACTATTGGAACAGGAGATGATTGTGTGTCTATGGTGAGCAATTCTTCAAAAATTCTAATTTCTGATGTTATTTGTGGTCCTGGCCATGGCATAAGTATTGGGAGCCTAGGGAAATCACATGAATGGTCCGAAGTGCACGATGTGACTGTTGATCATCTGTACTTATCTGGTACTCAGAATGGTGTGCGAATCAAAACCTGGCAGGGTGGTGCAGGTTTTGTAACAAGGATTATGTTCCACGATGTGTGGATGGAGAATGTCTCAAATCCAATTCTAATTGATCAATATTACTGTGATGGGCCAAAGCCATGCCAAAATCAGACATCTGCGATAAAAGTTGACGACATATCATACGTGGAGATCAAAGGAACTTCAGCTACAGAAGAAGCAATAAGATTTGCTTGCAGTGATAGCATCCCATGCCAAGGCTTGTATTTGGAAGATATTCAACTTATAGCTTACACAGGAGTTGCAACTTCATTTTGTTGGAATGCACAAGGAACAAGTTCTGGGTTGCTTTTTCCTCCACCTTGCTTTCCAACCAATGAAAGTATGATTGCGCAGAAAGTTTCATCGAAGTCCCTTGATTCAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_60433.p1 GENE.R_Transcript_60433~~R_Transcript_60433.p1 ORF type:complete len:446 (+),score=65.67,Glyco_hydro_28|PF00295.13|4.9e-93,Pectate_lyase_3|PF12708.3|2e-06 R_Transcript_60433:316-1653(+)
MKSPINSTSCCSDCVVKLLVIITISVLLNVSNTVAFESFLKLPLSGFSRNRPRIERVVHVNAYGAAGDGIHDDTEAFRNAWKVACSLSQRSTIVIPEGYTYKVQPIDFAGCQARVTLRILGAIVAPKHPEAWLGLNPRKWLYFHSVEHLTLEGGGTINGMGEEWWKLSCKFNATIPCHHAPTAITFHRCKDLTVTNINIVDSQQTHMSFTNCIGVMVSNVTITAPAESPNTDGIHISASTHVEVIDTTIGTGDDCVSMVSNSSKILISDVICGPGHGISIGSLGKSHEWSEVHDVTVDHLYLSGTQNGVRIKTWQGGAGFVTRIMFHDVWMENVSNPILIDQYYCDGPKPCQNQTSAIKVDDISYVEIKGTSATEEAIRFACSDSIPCQGLYLEDIQLIAYTGVATSFCWNAQGTSSGLLFPPPCFPTNESMIAQKVSSKSLDSS*

Click here to download the sequence:
Link to NCBI Protein BLAST