Transcript Information: R_Transcript_60438.p1


Annotated TAIR IDAT1G80170.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:30153646-30155683 | Reverse length=444
E-Value8E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9359201012581
Replicate 20.3181257638833
Replicate 31.4750550724795
Condition 2: 8 Hour
Replicate 10.46374744218267
Replicate 20.67760248003593
Replicate 30.96258541168719
Condition 3: 24 Hour
Replicate 10.69569112811225
Replicate 20.33417058925117
Replicate 31.6581594459771


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_60438.p1 GENE.R_Transcript_60438~~R_Transcript_60438.p1 ORF type:complete len:264 (+),score=34.41,Glyco_hydro_28|PF00295.13|3e-35,Pectate_lyase_3|PF12708.3|3e-07 R_Transcript_60438:113-904(+)
ATGAAATCCCCCATTAATTCAACCTCTTGCTGTTCAGATTGTGTTGTTAAATTGTGGGTAATTATTACTATAACTGCGCTGTTGAATGTTAGTAGCTCAGTGGCATTTGAGTCTTTTATGAAGCTCCCATTATCTGGGTTCTCTAGAAACAGACCCAGAATTGAAAGGGTTGTTCATGTTAATGCCTATGGAGCTGCAGGTGATGGGATTCATGATGATACTGAGGCTTTCAGAAATGCATGGAAAGTGGCATGTTCTTTGTCTCAGCGATCAACAATCGTCATTCCAGAGGGATACACTTATAAGGTGCAACCAATTGATTTTGCTGGATGTCAAGCCAGGGTGACTCTAAGGATTCTGGGTGCGATTGTTGCTCCTAAACATCCTGAAGCATGGCTCGGTTTGAACCCTCGCAAGTGGCTTTATTTCCATAGTGTAGAGCATCTAACTCTAGAAGGTGGAGGGACAATCAATGGGATGGGTGAGGAGTGGTGGAAACTGTCTTGCAAGTTCAATGCAACAATTCCTTGTCATCATGCTCCTACGGCTATCACTTTTCACAGGTGCAAGGATTTAACTGTCACAAATATCAATATCGTTGACAGTCAACAAACACACATGTCTTTCACTAATTGCATCGGGGTTATGGTGTCCAATGTCACAATTACAGCACCAGCTGAAAGTCCTAATACAGATGGAATCCACATAAGTGCGTCCACTCATGTTGAAGTAATAGATACTACTATTGGAACAGGTCAGTTTCTTTCTCTGGTGGTGGTGCTGTTACTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_60438.p1 GENE.R_Transcript_60438~~R_Transcript_60438.p1 ORF type:complete len:264 (+),score=34.41,Glyco_hydro_28|PF00295.13|3e-35,Pectate_lyase_3|PF12708.3|3e-07 R_Transcript_60438:113-904(+)
MKSPINSTSCCSDCVVKLWVIITITALLNVSSSVAFESFMKLPLSGFSRNRPRIERVVHVNAYGAAGDGIHDDTEAFRNAWKVACSLSQRSTIVIPEGYTYKVQPIDFAGCQARVTLRILGAIVAPKHPEAWLGLNPRKWLYFHSVEHLTLEGGGTINGMGEEWWKLSCKFNATIPCHHAPTAITFHRCKDLTVTNINIVDSQQTHMSFTNCIGVMVSNVTITAPAESPNTDGIHISASTHVEVIDTTIGTGQFLSLVVVLLL*

Click here to download the sequence:
Link to NCBI Protein BLAST