Transcript Information: R_Transcript_60555.p1


Annotated TAIR IDAT5G25580.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8903550-8906108 | Forward length=405
E-Value5.5E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.3281808520368
Replicate 24.7546732405645
Replicate 35.6004448631876
Condition 2: 8 Hour
Replicate 14.1709389188694
Replicate 24.4811386455282
Replicate 35.3108920853236
Condition 3: 24 Hour
Replicate 16.9471520869405
Replicate 27.3812189072673
Replicate 38.3339957725661


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_60555.p1 GENE.R_Transcript_60555~~R_Transcript_60555.p1 ORF type:complete len:499 (+),score=117.60 R_Transcript_60555:186-1682(+)
ATGGCGGAAAACGGAGGAACAAGCGAACTCGAAGAATCTCGGCTCAAGCTTCGTCAACGATGGGAGCTTGCTTCCGTTCTGAATTTCTTAACCGTGTTTGAGCCGGTGGTAGCGAAGGACCTGAAAATGTCAGCAGAGGAGATCGAGAATGGTTTGATAAGCCCAAATGCTTCACTTGCTAAGCTTCATGTTACGCTTCTCAAGGGAATACCACCTGTTAATAAGAACTTGTCCAATCCTGATGTATGGGTGACAATTCTTTGTAGAAAGCTTTCTGATTGGTGGCCTTGGGTTGCTGAAGGCAAAATTCCTTTAACTGTAGCAAAAGGAGAAGAAATATCCAGATACAAAGAACTTGATCCAGTTATTCGTTTGATGATGTTAAAAGCATTGTGTGAAGTCCGAACCGAGCAAGATGATCTAGTATCTTATATCAATGATGCGCTGAAGGAAGGAAAAGAGCTTTCTCATTTTCGAAAAGATAAGATCGCTGAAGATGGGACTGGGACTTCTTACTGGTATGATGGAAATTCTGTTATTGGTCATAGACTGTACAGGGAAGTTACGAAGACTAAAGTGAAGCCGAAGCAGAATGGCAGAGGCTACTTAGATCGACCACTGAGTGTAAAGTGGGAGACTCTTGCAACAAACCTTGGGGAATTCCGTGAAGTTATGGAGCAGTTGTCTTCTGCTAAAAAAGGAGTTGAGTCAAAAGTGTATAAGTTTATCGAATCTGAAGCCGTTCCTGTACTTGAGCAACTGGAAAAGAAGAAAGAGAGGGCTTTGAAACGACAGCAAAGGCAGGAGGCTCTTCTTAATAATTACCAACCTTATGCAGCTGGAGTCACCCGTTCTTGTCGCATCAGGAGGCCTGTTAGCTACACGTTTGCTGACTTTGACCGGACTATTGATGAGGCCATAAAACAAACAAGGAAAAGGAAAGATCGAAAAGAGGAAAGGTATGATGCAAAGCGTAATGAACGAGGAAAAAGGGACAATGGTGCCTCAGATGGAGACTCTGCAAAGGCTGCTCACTCTGATGAAGGATCTTTATCTTCTTCTATGAACGAGGATGTGGAACATGAACAGGATGAAGACATTAAAGATGATGAGGATGACAACTATAGTGAAAGGTCTGGCAAGAATGAAGACTGTAAAAGTGTTGTTAACCAGTCAAGTGATGATAGTGACCTCGACAATGGCAAAGCTGGAAGGGACAACCATGTAAAACTACACTCTGATGAGGAGTATGATAATGATGCTGCTGGATTACACACGAAAAACAGTCCAGGGCGTGCTTCTGGTCGTCACCATCAAGAAAACAGAAACCTGGGAGCAAAGAACCGACTGAGGCAAAGACCTACTCGAAACACAGCCATTGATTCTGTTGTCCCTGATTCTGACATTGGAAGCTCGTCTGAGAATCAGAGCTCTAGTGGACCGGGAATGGGAGACCCATCTCTGGTTTCTGATTCCGAGGATGAAATTGGCAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_60555.p1 GENE.R_Transcript_60555~~R_Transcript_60555.p1 ORF type:complete len:499 (+),score=117.60 R_Transcript_60555:186-1682(+)
MAENGGTSELEESRLKLRQRWELASVLNFLTVFEPVVAKDLKMSAEEIENGLISPNASLAKLHVTLLKGIPPVNKNLSNPDVWVTILCRKLSDWWPWVAEGKIPLTVAKGEEISRYKELDPVIRLMMLKALCEVRTEQDDLVSYINDALKEGKELSHFRKDKIAEDGTGTSYWYDGNSVIGHRLYREVTKTKVKPKQNGRGYLDRPLSVKWETLATNLGEFREVMEQLSSAKKGVESKVYKFIESEAVPVLEQLEKKKERALKRQQRQEALLNNYQPYAAGVTRSCRIRRPVSYTFADFDRTIDEAIKQTRKRKDRKEERYDAKRNERGKRDNGASDGDSAKAAHSDEGSLSSSMNEDVEHEQDEDIKDDEDDNYSERSGKNEDCKSVVNQSSDDSDLDNGKAGRDNHVKLHSDEEYDNDAAGLHTKNSPGRASGRHHQENRNLGAKNRLRQRPTRNTAIDSVVPDSDIGSSSENQSSSGPGMGDPSLVSDSEDEIGS*

Click here to download the sequence:
Link to NCBI Protein BLAST