Transcript Information: R_Transcript_60575.p1


Annotated TAIR IDAT4G17610.1
Annotated Gene NametRNA/rRNA methyltransferase (SpoU) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:9805652-9814910 | Reverse length=1850
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.281113930013
Replicate 26.6695639685247
Replicate 36.2689178027344
Condition 2: 8 Hour
Replicate 15.818571450506
Replicate 25.2726331036638
Replicate 36.3979714892873
Condition 3: 24 Hour
Replicate 17.3767908379795
Replicate 26.3322979099397
Replicate 37.6613651714063


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_60575.p1 GENE.R_Transcript_60575~~R_Transcript_60575.p1 ORF type:5prime_partial len:1637 (+),score=353.79,SpoU_methylase|PF00588.15|8.1e-25 R_Transcript_60575:2-4912(+)
GCGGTTCTGCCGTTGCCTCTATCCTGCTACATATTGAGCTGCCTACTAGATGCTGCAACAGAGAATTATGAAGCTGAGAAATGTTCCTCCTCAAGTGATATCTTTTGTGCAGACAAATTTTACCCGTATTTGGTCTGGGATCTATGTAATCTAACTATTGAAATGCTTTCACAAAATCTTGAACATAGATCCTCTGCTGCTCGGCTTCTCCTTCCATCTTTATTCAAAGCATTTGCTTCAGTGTGCTCTTTTACTGTTTGCATTCAAGGAGAATGGCACAACATCTCCAGACATCACTTCTTCATGAAACTGTGGAAGTGTTCCAAAATGCTGTTTGCTCTGGGGCCTGTAGAGAGGAGAGATGCATATGGTATACTCTCTCTGTATTTGTCCTATATTTCTTGCGATGATCGATTTGAGGTGGAAATAGGTGATAAATCTGAAGGTTTTGACATAAGAGCTGAAAGAGAGTTCTGGGATGAAATAAAAAGAGGCTTGGTTGATGAAGAAGGCATGGTGCGAAAGCAATCTTTACACATACTGAAGAAAATACTTCTCATTAATGAGGGAGGAACACTAAGCCAAAATGTTAAAGAGAAAAAGTCGCACCAAAAAGGTCCAGTTCCTAATGGTATGACAAAAAGGGACCTGTGGGCTGAAGAGGAAGCCAAGTCACTAGGTGTAGGAAAAATATCTTTGTCAACTAACAGGTATTCGAGTGAGGAGCAGAAGTGGCAGGCATTCGTTCTTCTGTATGAAATGCTGGAAGAGTATGGCACTCACTTGGTTGAAGCAGCTTGGAATCATCAGATGCTAACCCTACTTCACTCTTCTGTTCATCATGAGAGTTTTGTGGATCCTGAAACATCCAGCGAGAAGACTGATGTGCTTGGTCGCAACTTTGAGTGGTTAGCAATTTTGTGGGAACGTGGGCTATTTCATGATAATCCTCAAGTTAGATGCCTGATAATGCAGTCATTTCTTGATGTTGAATGGAAGAATCAGGACAACTGCATAGAACTGTTTCCAGAGGATTTTATATTGGGTGCATTTATGCATGGATTGAATGACCCAGTTCACCACAAAGATTTTGGTCTGAAAGGGGTGTACTCTTCAAAAACAATTGAAGGTGCTTCTAGCTTCTTGCAACAGTATTCTAGTTTCCTATCTGAAAGGGAACGGATTTTATTTTTGTACAAGTTGGCATCTGTAGCAAGACAACACTCTCTTGGTCGGGTTGGTTTGATGTGCCTTTCAGAATGCATATTGTCTTCTAGTAAATCCTCAGATCAAGTAAATCATGTAGGCATTTCTGAAGCTGTGGATTGCTTATCTGATTTGAATGGAGTGGAATGCCTTCGAACTCAAACTTGTGCTGATAAAGATGATTTGATTGATGGTCTAAGATTTCTTGTTGAAAATAGCAAACAACATTTTAATCCTAATTACCGTCTTAAAGTGTGCAAGAATGTTGTAGAAGCTATTGCTTCGGTGGTGTTTGCTCATGAGGTTTCTCTTGAGGCACTATTGCACTTCATAGCTGCCTTGCCACGTGAATTGACGGACATTGGTGGTTCTTTAAGGATCAAAGTACAGAAATGGCTTACTAGAGTTCTCAAACAAGGCTGTACTGCAAACAGCTCTAGATGTAAAACAGAGCTTCTGTGGAGTCTTTGTGATGTCCCTAGAAGTTTTACCAGTTGTCGAAATTTCTCCAACATTGGAGGGTATTATGATGATGAAGACTTGTTTGCATGGAGCTCCGAATCTGAAAGATGGGCAAGAGTTCTATTTCTTCTTGTGGAGGAGGAAAACCAGCTGGAACCTCTTTTTATGTTTATCAAGGAAAAGGGCGCTAGTATCTGCCACCAGACCAGCGTGGAAAAAGGTGTGCCAGTGAAGTTTCTCATGCTTATCTTGAGCCTGGTTCAAGAGCTTGAAATAATGCGGCAAAGAATCCAAAGTGGCATCAAAACAAACCTTACAATTGATCCCAAAGTGAAGCTGCATGATACAGTGCATGAAAGTCGTATTACTCTGGAAAAATTGGTTGATGTTTTCCTGGTCATATTGGACAACTTGGCCGCGTTTGCTGAGACATCTTGTTCTATATTCTGGTCTGATGTTGTAGTGGATACTAGGCTTCCTGGTTCTGTAACTGGAAAGTTAGGAGGCCCAAGTCAACGGCGGCTGTCTAATGCTATGACTGCTGCTGTCTTGCAAGCAATCATTTCAGTAAGATCTGTTGCATCTGTCTCATCATGCTGCAGTCTTCTAAGGAAAGATTGTAGTCTAAATCTTTCTTTCACTTTCTTGTGGAAGTTCTTCCACATGGTTGTTTCCTCAGCAATAGCCGATTCTGAGACCAATGCAGAAATACATTTGGCTGCATATGAAGCTCTGAGTTTTGTTCTTAAAGCATCTGTTCCTGTGATATCTCCTTCGGCTATGAACTTCATTCAAGAAATGCATTGGTCATCTGACCCAGTATCAAAACATAAGTCTATCCTTGATCCCCTACTTCTGACATTTTTGAATCACATAAATGGTTTTCTTGCTGGGCGACAATTGGCACGAACGCGTAGGGCTATATTAATGAATTTTAAGTGGCTCTGCCTTGAAGCTGTATTGTCAATTCCATTCCATGCTTGTGAAAATGGAATCCAGCTTGGACACGACAATACTTTCTTCTCAGATGCTGCTGTGAGGTTTGTTTTTAGTGACCTTGTTGAGAGCCTTGAGAATGCTGGAGAAAGTTCTGTTTTGCCTATGCTGAGATCAGTCAGAATGGTTTTGGATCTGTTGACTTCGTGCAATGCATTTGTCTCTTCATGTCATGGGGTTGATGCCGAGATGATGTGGAAATTGGTTCGGTCATCATGGATATTGCATACTAGCTGTAATAAACGGAGGGTTGCACCTATTGCAGCATTTCTCTCTTCTGTTGTGCATTCATCTGTTTTTGGAGACGAGCGCATGCATGTGGCTGATGTTGCTCCCGGCCCTCTGAAGTGGTTCTGTGAAAAGATTCTTGAAGAAGGCTTGAAAAGTCCTCGTACCATTCGCCTAGCGGCTCTGCACCTGACAGGATTATGGCTTTTGAATCCTACTATTATTAAGTATTATATGAAGGAGCTTAAGCTTTTGACACTATATGGTTCTGTTGCTTTTGATGAAGATTTTGAAGCTGAATTGACTGAGAATGATGATGCAAGAACTGAGGTGTCATTATTGGCAAAAGGTCCAGATTTTGAGCTGACTGAAGCATATATCAATACAGAGTTGTATGCACGAGTTTCTGTCGCTGTGCTGTTTTACAAGCTTGCAGATTTAGCTGATATGGTTGGATCGGGGAAAGAAAGTGATGATTCCCCAGTGGCTCTTGAATCAGGGAAGTTATTCTTGTTGGAGCTTCTTGATTCAGTGGTTAATGACAAGGATCTTGCTAAAGAGCTGTATAAGAAGTATAGTGCAGTTCATCGCAAGAAAGCCCGTGCCTGGCAAATGATATGTGTTCTATCAAGATTTGCTCATCAAGATGTTATTCAGCAAGTGACACACTACCTGTCAGTATCCCTCTATAGGAACAACTTGCCTGCTGTTCGACAGTACTTGGAAACCTTTGCAATACATGTTTACCTTAAATTCCCATCCTTGGTAGGAAAGCATTTAGTTACAACTATGTGTGATTATGATATGAAGACTCAGGCGCTGTCCTCTTATGTATTTATAGCAGCTAATATCATACTCCATGCAAAAGCGGAAGATCAAGCTCGGCACTTAAATGAACTGCTGCCCCCTATAATTCCATTGCTGACTTCTCATCATCACACCTTACGTGGTTTTACTCAGTTGCTCGTATATCAAGTTTTCTGTAAAGTGCTGCCTGCATCAGATTCTAACTGTTCTGGACCCATCATTTTGGAGAAAAGGTGCTTCAGTAATTTGAAGTCATACTTGGCACTGAATCCTGACTGTAGGAGATTGCGGGCATCGATGGAAGGCTATCTTGATGCTTTTAATCCGGATGAGTCTGTTACCCCTGCTGGTATCTTCTCAAACCGTATTGAGGATATGGAGTTCGAATGCGTTCCAGTGTCTCTCATGGAGCAAGTAACGAATTTTCTGAATGATGTCAGAGAAGAACTTAGATGTTCAATGGCTAAGGATGAAGTTACACTCAAGAATGAGACTTTAAGAATATCAGAGGATCCAGACTGCAGGCCCCGCTCAGCAGATGCTGGCCAGGTGTTGCTTGGTTCTCAGCGTAGTAATATATCATTGGACTTCCAGAAGAAGTTCACATATTCTAAACATGAAGTACTGAACAATAGTTCAGGTCAACTGGAGTTCAAGCCGCTTTTTGAGATGGAAAAGGAAGACCAACTGCTCGAGCAAATGTTGCGGTCGAGAATCATGTATATGGAAAACTTGAAGGCAAACCAACAGCAATTGATAATTGTTGCATCTCTAATTGATCGTATACCTAACCTTGCTGGGCTGGCAAGGACTTGTGAGGTTTTCAAAGCAAGTGGCTTGGCAATAGCAGATGCTAATGTGCTACAAGACAAACAGTTCCAGCTGATAAGTGTGACAGCTGAGAAGTGGATTCCTATCATAGAGGTGCCTGTGATTAGTGTCAAAAGCTTTGTGGAGAGGAAGAAACGAGAGGGTTTCTCAATTTTGGGTTTGGAGCAAACTGCAAATAGCATACCCCTGGACAAGTATAGCTTCCCGCAGAAAGCGGTTCTTGTTCTTGGGCGCGAAAAAGAGGGTATACCTGCAGATATTATCCATGTTTTGGATGCTTGTATTGAGATCCCACAGTTGGGAGTTGTTAGGTCACTCAACGTTCACGTCAGTGGTGCTATTGCTACCTGGGAATATACAAGACAGCAGAGATTGATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_60575.p1 GENE.R_Transcript_60575~~R_Transcript_60575.p1 ORF type:5prime_partial len:1637 (+),score=353.79,SpoU_methylase|PF00588.15|8.1e-25 R_Transcript_60575:2-4912(+)
AVLPLPLSCYILSCLLDAATENYEAEKCSSSSDIFCADKFYPYLVWDLCNLTIEMLSQNLEHRSSAARLLLPSLFKAFASVCSFTVCIQGEWHNISRHHFFMKLWKCSKMLFALGPVERRDAYGILSLYLSYISCDDRFEVEIGDKSEGFDIRAEREFWDEIKRGLVDEEGMVRKQSLHILKKILLINEGGTLSQNVKEKKSHQKGPVPNGMTKRDLWAEEEAKSLGVGKISLSTNRYSSEEQKWQAFVLLYEMLEEYGTHLVEAAWNHQMLTLLHSSVHHESFVDPETSSEKTDVLGRNFEWLAILWERGLFHDNPQVRCLIMQSFLDVEWKNQDNCIELFPEDFILGAFMHGLNDPVHHKDFGLKGVYSSKTIEGASSFLQQYSSFLSERERILFLYKLASVARQHSLGRVGLMCLSECILSSSKSSDQVNHVGISEAVDCLSDLNGVECLRTQTCADKDDLIDGLRFLVENSKQHFNPNYRLKVCKNVVEAIASVVFAHEVSLEALLHFIAALPRELTDIGGSLRIKVQKWLTRVLKQGCTANSSRCKTELLWSLCDVPRSFTSCRNFSNIGGYYDDEDLFAWSSESERWARVLFLLVEEENQLEPLFMFIKEKGASICHQTSVEKGVPVKFLMLILSLVQELEIMRQRIQSGIKTNLTIDPKVKLHDTVHESRITLEKLVDVFLVILDNLAAFAETSCSIFWSDVVVDTRLPGSVTGKLGGPSQRRLSNAMTAAVLQAIISVRSVASVSSCCSLLRKDCSLNLSFTFLWKFFHMVVSSAIADSETNAEIHLAAYEALSFVLKASVPVISPSAMNFIQEMHWSSDPVSKHKSILDPLLLTFLNHINGFLAGRQLARTRRAILMNFKWLCLEAVLSIPFHACENGIQLGHDNTFFSDAAVRFVFSDLVESLENAGESSVLPMLRSVRMVLDLLTSCNAFVSSCHGVDAEMMWKLVRSSWILHTSCNKRRVAPIAAFLSSVVHSSVFGDERMHVADVAPGPLKWFCEKILEEGLKSPRTIRLAALHLTGLWLLNPTIIKYYMKELKLLTLYGSVAFDEDFEAELTENDDARTEVSLLAKGPDFELTEAYINTELYARVSVAVLFYKLADLADMVGSGKESDDSPVALESGKLFLLELLDSVVNDKDLAKELYKKYSAVHRKKARAWQMICVLSRFAHQDVIQQVTHYLSVSLYRNNLPAVRQYLETFAIHVYLKFPSLVGKHLVTTMCDYDMKTQALSSYVFIAANIILHAKAEDQARHLNELLPPIIPLLTSHHHTLRGFTQLLVYQVFCKVLPASDSNCSGPIILEKRCFSNLKSYLALNPDCRRLRASMEGYLDAFNPDESVTPAGIFSNRIEDMEFECVPVSLMEQVTNFLNDVREELRCSMAKDEVTLKNETLRISEDPDCRPRSADAGQVLLGSQRSNISLDFQKKFTYSKHEVLNNSSGQLEFKPLFEMEKEDQLLEQMLRSRIMYMENLKANQQQLIIVASLIDRIPNLAGLARTCEVFKASGLAIADANVLQDKQFQLISVTAEKWIPIIEVPVISVKSFVERKKREGFSILGLEQTANSIPLDKYSFPQKAVLVLGREKEGIPADIIHVLDACIEIPQLGVVRSLNVHVSGAIATWEYTRQQRLM*

Click here to download the sequence:
Link to NCBI Protein BLAST