Transcript Information: R_Transcript_61939.p1


Annotated TAIR IDAT5G48335.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19588083-19589366 | Forward length=114
E-Value4E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.400204702048
Replicate 222.640589003117
Replicate 324.424653942885
Condition 2: 8 Hour
Replicate 118.585656526222
Replicate 219.397391476691
Replicate 324.493739632329
Condition 3: 24 Hour
Replicate 123.096107271244
Replicate 223.383888944226
Replicate 325.975167610354


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_61939.p1 GENE.R_Transcript_61939~~R_Transcript_61939.p1 ORF type:complete len:166 (+),score=20.79 R_Transcript_61939:288-785(+)
ATGCTTGAAAACCCATCGGACCCTCCCATACCCAACTCTTTGCCCGCTCCCATCAAGCGATATGCTCCACCCAATCAGCGGAATCGTAGCCTCAACAGGCGCAAATCTGGAGATCGATCAGAAAGAACCAGCAGTCTATACTCAAATGATGGTGATAAGAATTCAGTTCCTGGTTTTCGAAGTGCTGCTACAGAACATTGTTATGCAGGGAGCAACATATCTGTAAATGATAGATCTCAACTACAATTAATAAGCCTATCAGGGTGTTCTAGAAGTGAAGCCTCGCAACTTCTGCATGAACGTTGGAATGCAGCTATACATAGCTACAATGATCCTTTAGTAGATTTATCTGAAAGACCAGTCATGTACACTAGCAGTCCTGCATCAGCATGGGGAACCTTTAGACTCCCTCATCAGCTAATGTCTGGTCCGCAGAAGGATTTCTTGGCTGAACTTCAGGATGCTATTCATAAATCGAATACCGACTCAACAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_61939.p1 GENE.R_Transcript_61939~~R_Transcript_61939.p1 ORF type:complete len:166 (+),score=20.79 R_Transcript_61939:288-785(+)
MLENPSDPPIPNSLPAPIKRYAPPNQRNRSLNRRKSGDRSERTSSLYSNDGDKNSVPGFRSAATEHCYAGSNISVNDRSQLQLISLSGCSRSEASQLLHERWNAAIHSYNDPLVDLSERPVMYTSSPASAWGTFRLPHQLMSGPQKDFLAELQDAIHKSNTDSTN*

Click here to download the sequence:
Link to NCBI Protein BLAST