Transcript Information: R_Transcript_61946.p1


Annotated TAIR IDAT5G48335.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19588083-19589366 | Forward length=114
E-Value2.9E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.096605980863
Replicate 23.6811695535068
Replicate 36.2472920716779
Condition 2: 8 Hour
Replicate 13.6569798297834
Replicate 27.8408286975586
Replicate 36.7184532815718
Condition 3: 24 Hour
Replicate 16.41029682332
Replicate 25.7286386728772
Replicate 35.9693740055174


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_61946.p1 GENE.R_Transcript_61946~~R_Transcript_61946.p1 ORF type:complete len:154 (+),score=20.13 R_Transcript_61946:276-737(+)
ATGCTTGAAAACCCATCGGACCCTCCCATACCCAACTCTTTGCCCGCTCCCATCAAGCGATATGCTCCACCCAATCAGCGGAATCGTAGCCTCAACAGGCGCAAATCTGGAGATCGATCAGAAAGAACCAGCAGTCTATACTCAAATGATGGTGATAAGAATTCAGTTCCTGGTTTTCGAAGTGCTGCTACAGAACATTGTTATGCAGGGAGCAGCATACCTGTAAATGAAAGATCTCTACCACAATTAATAAGCCTAGCAGGGTGTTCTAGAAGTGAAGCCTCGCAACTTCTGCATGAACGTTGGAATGCAGCTATACATAGCTACAATGATCCTTTAGTAGATTTATCTGAAAGACCAGTCATGTACACTAGCAGTCCTGCATCAGCATGGGGAACCTTTAGACTCCCTCATCAGGTGAATGCCAATCTGCTCTCATCTTTGATTGAGCTAGCCACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_61946.p1 GENE.R_Transcript_61946~~R_Transcript_61946.p1 ORF type:complete len:154 (+),score=20.13 R_Transcript_61946:276-737(+)
MLENPSDPPIPNSLPAPIKRYAPPNQRNRSLNRRKSGDRSERTSSLYSNDGDKNSVPGFRSAATEHCYAGSSIPVNERSLPQLISLAGCSRSEASQLLHERWNAAIHSYNDPLVDLSERPVMYTSSPASAWGTFRLPHQVNANLLSSLIELAT*

Click here to download the sequence:
Link to NCBI Protein BLAST