Transcript Information: R_Transcript_61948.p1


Annotated TAIR IDAT5G48335.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19588083-19589366 | Forward length=114
E-Value3E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1615520607548
Replicate 21.5270036666399
Replicate 31.2494584143356
Condition 2: 8 Hour
Replicate 11.1129938612384
Replicate 21.829526696097
Replicate 32.6402342720563
Condition 3: 24 Hour
Replicate 12.9219027380714
Replicate 22.2055258890577
Replicate 31.1938748011035


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_61948.p1 GENE.R_Transcript_61948~~R_Transcript_61948.p1 ORF type:5prime_partial len:110 (-),score=17.00 R_Transcript_61948:33-362(-)
AGTCTTCACTCAAATGATGGTGATAAGAATTCAGTTCCTGGTTTTCGAAGTGCTGCTACAGAACATTGTGATGCAGGGAGCAACATATCTGTAAATGATAGATCTCAACTACAATTAATAAGCCTATCGGGGTGTTCTAGAAGTGAAGCCTCGCAACTTCTGCATGAACGTTGGAATGCAACTATACATAGCTACAATGATCCTTTAGTAGATTTATCTGAAAGACCAGTCATGTACACTAGCAGTCCAGCATCAGCATGGGGAACCTTTAGACTCCCTCATCAGGTGAATGCCAATCTGCTCTCATCTTTGATTGAGCTAGCCACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_61948.p1 GENE.R_Transcript_61948~~R_Transcript_61948.p1 ORF type:5prime_partial len:110 (-),score=17.00 R_Transcript_61948:33-362(-)
SLHSNDGDKNSVPGFRSAATEHCDAGSNISVNDRSQLQLISLSGCSRSEASQLLHERWNATIHSYNDPLVDLSERPVMYTSSPASAWGTFRLPHQVNANLLSSLIELAT*

Click here to download the sequence:
Link to NCBI Protein BLAST