Transcript Information: R_Transcript_62021.p1


Annotated TAIR IDAT4G16310.1
Annotated Gene NameLSD1-like 3
Annotated Gene Symbol(s)LDL3
Annotation TypeOrtholog
Chromosome Positionchr4:9218636-9224764 | Forward length=1628
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2245315274845
Replicate 23.6481760828318
Replicate 34.8819608735107
Condition 2: 8 Hour
Replicate 14.7814917377298
Replicate 25.4816439999127
Replicate 37.7084792608363
Condition 3: 24 Hour
Replicate 16.7367003886019
Replicate 25.8235145522102
Replicate 36.7558899506014


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62021.p1 GENE.R_Transcript_62021~~R_Transcript_62021.p1 ORF type:complete len:1905 (+),score=510.93,Amino_oxidase|PF01593.20|3.8e-94,NAD_binding_8|PF13450.2|4.9e-14,SWIRM|PF04433.13|8.5e-14,SWIRM|PF04433.13|3.7e+03,Thi4|PF01946.13|2e-06,DAO|PF01266.20|4.1e-06,Pyr_redox_3|PF13738.2|1.3e-05,FAD_binding_2|PF00890.20|1.6e-05 R_Transcript_62021:660-6374(+)
ATGGAAGGTGAAGACAAAAAGGGTGGTCCTAAAAAGAGGTCTAAGATGGTGGAAATCAATTTGGATTCGGATGATGATGAGCCAATTGGGGCATTGTTTAAGTTGAAAAGCAAGAAGAACCCTAAGAAAGTTAAGTTGGCAAGTGATGGGGAGAAAGGTAAGAAGGTAGAGGTTGTTGTTAAGGTGGGAAAAGATGTGGCGGTGAATGAGGATTTTGGGGGAATGGAGGATACTCTAGCAAGCTTTAGGAAGAAGTTGAAGGGTCCTAAGAAAGATAGTGGGTCTGTGAGTTTGATGAAGAAGGAATTGGGATTGAAATTGGCTGAACCATCAGAGGGACATCTTGATGGGAAGGTTAAGGATGAGGGCTTTGTCGCTAAGTTGGTCAAAGATGAGGAGGATGAAGTTGGTTATCTGAATTCTGATGTAAATATTGGTCAAGGGTCAGAAAATAAGTGTGAGAAGATAGTTAAGAACTCCATGCCTGTATCAGCTGATGACAATTCATCCGAATTAAAAACGGAGAGGAAGGAGGGACTATTGGATCCCCTAAACAAGTCCAAGAAGAAGAGTAGGAAGTCCAAGTCTGCTTCAGCTGAAAACAATCTGAGGGCATCTATTGGGACGGACGATGGTGAGTTCCCGAATACCAGTGCATTAGGAGATCAGGTGGAAGAGAAGGAAGCTTTATCTGGCCAGTCAGATGAAGTTTTGGTGGATTCTCTCTCTTCATTTTTTAGGAAGGCGCAGAAGTTCCAGTCCGGTTTGCAGAAAAGATCGCGAGCCTTGTCCGCTTCAAAATCCAGAAAGGGAGAGCAAGTCTCTGCAATTCATGTTTGTCCAATCTCAGATGATGCGTCTTTAGATCTTCTATCTATGAATCGGCGGAATCCTGTTTCAGATGACCGAATTAGCTCTAGAACTCCCCAGAGCAAGTCAGAAGCAGGTCAGGATTTGGGCGACCCAATTGGTGATGGGTCTGTCAGTGTGCCAGTGAGAGATTCTTTGAATGTTACTAATATGGATAAAGGTGAAAGTACTAGGTATGGTGATGATAGATGTGGTGACACTTCTGAGCCAGCTTTTGGTGAGGTATCTAGTTGTAGTTTGATTGGATGCTCTGAGAAAATACGAGAACTCAAAAGCAATGAAATTTGTGGGGATCAACAAGAACGTAGAAGTAGTGAAGCTTGTGGGGAGGCTTTAGCGATGCAGGAGGAGACTTTGATGGATTCTTGTGAAATGGTTTTTGGCAAGGATGCTTCTGAATCTCCTGTCATAGAAGTTAAAAAACAGTGTACTTTTGGCTCTCAAAATTCCAGACGCCAGAATGGAGTTACGCATTTTGCCTCTTCAAATGCAAGCGGCGCAGTCAATGATCCTTTTTCTGCACCTGCGTCAGAATCTATGGTTGAGCTCAGCAAGCTGGACAAGCATGAGTCTAATGTAATCTTGTTAGATAAGTTTGTTCCACATTCATTTGAGGCTTCAAGGAGTGATCCAGTATCGGCGGATCAAAATAAGGGAGAGGATGTATCTATGGCAACCGACGTAGATGAAGGAGCTAATGGGATATTATCCCCCTTTGTTGGGCCAGATGATGATGGTGCTTGTCAAGAAAATGCAGGATGCTTTTCTGTAGCCAGCAAGAAATGTAATAATATTGTTGTGAATGAACGCACTGTCCGTAAAGCTAAAAAGCGCAAAGATGGTGACATGGCTTATGAGGGTGACATTGCTTGGGAGGTCCTTGTGCATGAGGAACATGATGTGGGCAGAGATCAAGGTACTCATTTGAAAGAGAGGTATTCCTCTTCAAATTCAGATCCTGATCATGAGACCGGAGGAATTGCAGCTGTTTCAGTTGGTTTGAAAGCACATGCAATTGGTCCTGTTGAGAAGATTAGGTTTAAGGAGGTCTTGAAACGCAAAGGTGGGCTTCAGGAATACTTGGAATGCAGGAACAAGATTTTAAGCCTTTGGAACAAGGATGTCACCCGTATCTTACCTCTTATGGATTGTGGAGTAACTGAAACTCCCACTACTAATGAACCTTCTCGTGCTACCCTGATGAGGGATGTATACACATTTCTTGACAAAAGTGGCTATATCAATACTGGAATAGCTGCTAACAAGGAGAAAGCAGATCCTAGTTCTAGAGGTAATTATAAACTCATGGGAGAAAAGAAGTTTGAGGGGAGTTCTGAAGCTTCTGTTAAAGACTCAGCAGATGGAGTTTCCTTTATCCTTGGTCAAGTCAAGAGCACTGATATACACACCGAGGCTAATGGTGATCTTACCTTTGGTGATGAAAACCACACAAAAGAACCAGTGAAAAGTGTTGTGGAGAATGAATTTGATCTATCCTCTGATAAGCTGCCTGATGGGTGTGCAGTCATAGACGAATTAGATAAGCAACTTGCAGATGTTCAAATATCCAAAAGCATTGTGGAATCAGAATGTCCTGCTACTGATTCTCTCGAAAAGAGCCTTGAGAATGGTACAGTTCCCAGGCAATCAATGAGATGTGGTCAGTTGGAGACCAATGATCTTGTGCAGTGTGATTTGGAAAACCAGAAAAGGATCATAATAGTGGGAGCAGGTCCTGCAGGTTTGACTGCTGCTCGTCACTTGCAAAGGCAAGGTTTTTCTGTCATTGTGCTTGAGGCAAGGAGTAGGATAGGTGGTCGGGTTTATACAGATCACTCCTCTCTTTCAGTTCCTGTGGACCTTGGGGCTAGCATTATTACCGGAGTTGAGGCTGATGTGACCAGTGAAAGACGACCAGACCCCTCCTCCTTGATTTGTGCTCAATTGGGTTTGGAGTTGACAATACTTAATAGTGACTGTCCACTTTATGATATTGTAACGGGTCAGAAGGTTCCTGCAGATGTTGATGAAGCTTTGGAAGCAGAGTTTAATAGTCTTCTTGATAATATGATGTTGGTTGTTGCTCAGATGGGGGACAGTGCAACCAGAATGTCTCTCGAGGATGGTTTAGAATATGGTCTTAAAAGATGCCACAAAGTCCTTTCTGGAACACACAGTGAGGGGTCTGAGACATTAAGGCCATTGGATGCCACCTTCAATGAAGAAAGTGGCACTGATGGCTGTCAGACTGTGGAAAGGAATGATGTTAAGGGTGCTTCACTGAGTCCTCTTGAGAGGAGGGTGATGGATTGGCATTTTGCCCACTTGGAGTATGGTTGTGCTGCTTTGCTGAAGGATGTATCTCTTCCTCATTGGAACCAGGATGATGTGTATGGAGGATTCGGAGGGGCCCATTGTATGATTAAAGGGGGTTATGGTGCAGTTATGGAATCTATCTCACATGGACTTTCTATTAATTTGAACCAGGTTGTTGCCAACATTTCATACTCTGGAATGGACCCTGGAAGAGCGGCGGATGATTCTTCTCACAAGGTAAAAGTTTCCACAACTAGCGGCAATGAGTTCTTTGGAGATGCAGTTTTGATTACTGTACCACTTGGGTGCTTAAAGGCAGAATCCATCAAGTTCTCTCCACCGTTGCCACAGTGGAAGCATTCAGCCATCCAGCGGTTGGGTTTTGGTGTTCTCAATAAAGTAGTCCTGGAGTTCACAGAAGTGTTTTGGGATGATACTGTGGATTACTTTGGAGCTACTGCTGAGCATAGTGACCTGAGGGGCCGCTGCTTCATGTTCTGGAATGTCAAGAAGACAGTTGGGGCTCCTGTTCTTATAGCTTTAGTTGTGGGTAAAGCAGCTGTAGATGGTCAAGGTGTGAGCCACTCTGATCATGTAAGTCACGCTCTAGCAGTTCTACGCAAACTATTTGGGGATACTGCTGTCCCTGATCCTGTTGCATCAGTCGTGACGGACTGGGGAAGAGATCCTTTTAGCTACGGTGCATATTCTTATGTTGCTGTCGGAGCTACTGGGGAAGACTATGACATATTGGGCAGACCAGTTGAGAATTGTTTGTTTTTTGCTGGTGAAGCTACCTGCAAAGAGCATCCAGATACAGTAGGTGGTGCAATGCTGAGTGGGCTTCGGGAGGCAGTTCGTATTATTGACATATTGACTACTGGAAGTGATTACACGGCAGAGGCAGAAGCAATTGAAGCTGCCCACAGACAATCAAACAGTGAGAAGAATGAAGTCAAGGATATCGCAAGAAGACTTGATGCAGTTGATCTCTCCAATTCCTTCTACAAGAGCCCATCAGATAGATCCCAGATGTTGGTGAGGGAAAGTTTACTGCAGGATATTTTCTTTAATGCTAAAACTTCTGCTGGGCGATTGCGTTTGGCTAAAGAGTTGTTGAGACTCCCTGTTGACTTTCTGAAGTCTTTTGCTGGGACTAAAGATGGGCTCAGTGTACTCAACTCATGGATATTGGATTCCATGGGAAAGGATGCAACTCAACTCCTGCGCCACTGCGTCCGTATTCTTGTGTCGGTCTCCACTGACTTGGTAGCTGTTCGTTTGTCAGGTATTGGGAAGACTGTCAAAGAGAAAGTTTGTGTTCATACAAGCCGTGATATACGTAGCATAGCGAGTCAATTGGTCAACATGTGGATTGAAGTTTTCCGTAAGGAAAAGGCTACTAATGGTGGCTTGAAGTTATTGAGACACGTGACAAATGCAGATTCCTCAAAAGGTAGAGGAAAAGATCCAGGCTCCAGAAAGCCTCCTATGCAGCACTCCGGTGGGAATAAAGCAAATTTAAGCTCAAAGAAGTTCATTGGAAAGCAAGGAAAGCCCGAAACTGTGAGTAACCTAAAAGGAGATTCTAAGGTGATGGAGGATGAGATACCTTTATCTGAAGAAGAACGTGCTGCTGTTGCTGCTGCAGAGGCAGCCCAGGCTGCTGCTCTAGCCGCAGCTGAGGCATATGCGTCATCAGAAGCTAGGTATAATATGATGCAGTTGCCCAAGATACCATCTTTCCAGAAGTTTGCTAGACAGGAGCAGTATGCACAGATGGATGAATCTGAACGAAAAAGGTGGTCTGGTGGCGTTCTGGGAAGACAGGACTGTATTTCAGAAATAGACTCTAGAAATTGTAGAGTTAGGGACTGGTCTGTTGACTTCTCTGCAACCTGTGCCAATCTTGACAATTCAAGAATGTCAGCAGATAACCTTTCACAGCGAAGTCTTTCAAATGATATGCCCCAGTTGAACTGGAGAGAGCATTCCGGGGAGAGTGCAGCTGGGGACAGCACTGCATTTACTAAAGCATGGGTTAATTCTTCTGGTAGTGATGGGATAAAAGACTACCATGCCATTGAGAGATGGCAGTGTCAAGCTGCAGAAGCTGAGTACGAATTTCAGTCCTTCACCCATGTTGGTGATGAGGAAGATTCAAGTACAGTGTCAAGATTGCTGACACGGAAGCACGAAGGACTGGTAAATGAGAGTTCAGTTTCGCAAGTGACAATAAACATGGATTTGAGTAACCAACGAAGAGGAGCTGAGCATATTAAGCAAGGCGTTGTGGATTATGTTGCATCATTGCTCATGCCTTTATATAAAGCTAGGAAGATCGATAGAGATGGATACAAGTCCATAATGAAAAAGAGTGCTACTAAGGTAATGGAGCAGACAACAGATGCAGAGAAAGCAATGGCTGTGTCTGAGTTTTTGGATTTTAAGCGTAAGAACAAGATTCGTGCGTTTGTTGACAAGCTGATTGAGAGACACATGTCATTAAAGCCAGTTGTCAAACCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62021.p1 GENE.R_Transcript_62021~~R_Transcript_62021.p1 ORF type:complete len:1905 (+),score=510.93,Amino_oxidase|PF01593.20|3.8e-94,NAD_binding_8|PF13450.2|4.9e-14,SWIRM|PF04433.13|8.5e-14,SWIRM|PF04433.13|3.7e+03,Thi4|PF01946.13|2e-06,DAO|PF01266.20|4.1e-06,Pyr_redox_3|PF13738.2|1.3e-05,FAD_binding_2|PF00890.20|1.6e-05 R_Transcript_62021:660-6374(+)
MEGEDKKGGPKKRSKMVEINLDSDDDEPIGALFKLKSKKNPKKVKLASDGEKGKKVEVVVKVGKDVAVNEDFGGMEDTLASFRKKLKGPKKDSGSVSLMKKELGLKLAEPSEGHLDGKVKDEGFVAKLVKDEEDEVGYLNSDVNIGQGSENKCEKIVKNSMPVSADDNSSELKTERKEGLLDPLNKSKKKSRKSKSASAENNLRASIGTDDGEFPNTSALGDQVEEKEALSGQSDEVLVDSLSSFFRKAQKFQSGLQKRSRALSASKSRKGEQVSAIHVCPISDDASLDLLSMNRRNPVSDDRISSRTPQSKSEAGQDLGDPIGDGSVSVPVRDSLNVTNMDKGESTRYGDDRCGDTSEPAFGEVSSCSLIGCSEKIRELKSNEICGDQQERRSSEACGEALAMQEETLMDSCEMVFGKDASESPVIEVKKQCTFGSQNSRRQNGVTHFASSNASGAVNDPFSAPASESMVELSKLDKHESNVILLDKFVPHSFEASRSDPVSADQNKGEDVSMATDVDEGANGILSPFVGPDDDGACQENAGCFSVASKKCNNIVVNERTVRKAKKRKDGDMAYEGDIAWEVLVHEEHDVGRDQGTHLKERYSSSNSDPDHETGGIAAVSVGLKAHAIGPVEKIRFKEVLKRKGGLQEYLECRNKILSLWNKDVTRILPLMDCGVTETPTTNEPSRATLMRDVYTFLDKSGYINTGIAANKEKADPSSRGNYKLMGEKKFEGSSEASVKDSADGVSFILGQVKSTDIHTEANGDLTFGDENHTKEPVKSVVENEFDLSSDKLPDGCAVIDELDKQLADVQISKSIVESECPATDSLEKSLENGTVPRQSMRCGQLETNDLVQCDLENQKRIIIVGAGPAGLTAARHLQRQGFSVIVLEARSRIGGRVYTDHSSLSVPVDLGASIITGVEADVTSERRPDPSSLICAQLGLELTILNSDCPLYDIVTGQKVPADVDEALEAEFNSLLDNMMLVVAQMGDSATRMSLEDGLEYGLKRCHKVLSGTHSEGSETLRPLDATFNEESGTDGCQTVERNDVKGASLSPLERRVMDWHFAHLEYGCAALLKDVSLPHWNQDDVYGGFGGAHCMIKGGYGAVMESISHGLSINLNQVVANISYSGMDPGRAADDSSHKVKVSTTSGNEFFGDAVLITVPLGCLKAESIKFSPPLPQWKHSAIQRLGFGVLNKVVLEFTEVFWDDTVDYFGATAEHSDLRGRCFMFWNVKKTVGAPVLIALVVGKAAVDGQGVSHSDHVSHALAVLRKLFGDTAVPDPVASVVTDWGRDPFSYGAYSYVAVGATGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGSDYTAEAEAIEAAHRQSNSEKNEVKDIARRLDAVDLSNSFYKSPSDRSQMLVRESLLQDIFFNAKTSAGRLRLAKELLRLPVDFLKSFAGTKDGLSVLNSWILDSMGKDATQLLRHCVRILVSVSTDLVAVRLSGIGKTVKEKVCVHTSRDIRSIASQLVNMWIEVFRKEKATNGGLKLLRHVTNADSSKGRGKDPGSRKPPMQHSGGNKANLSSKKFIGKQGKPETVSNLKGDSKVMEDEIPLSEEERAAVAAAEAAQAAALAAAEAYASSEARYNMMQLPKIPSFQKFARQEQYAQMDESERKRWSGGVLGRQDCISEIDSRNCRVRDWSVDFSATCANLDNSRMSADNLSQRSLSNDMPQLNWREHSGESAAGDSTAFTKAWVNSSGSDGIKDYHAIERWQCQAAEAEYEFQSFTHVGDEEDSSTVSRLLTRKHEGLVNESSVSQVTINMDLSNQRRGAEHIKQGVVDYVASLLMPLYKARKIDRDGYKSIMKKSATKVMEQTTDAEKAMAVSEFLDFKRKNKIRAFVDKLIERHMSLKPVVKP*

Click here to download the sequence:
Link to NCBI Protein BLAST