Transcript Information: R_Transcript_62075.p1


Annotated TAIR IDAT5G43820.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17618948-17620588 | Forward length=546
E-Value8.4E-213
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4803675164949
Replicate 20.69499949113182
Replicate 31.676102750938
Condition 2: 8 Hour
Replicate 11.194432436451
Replicate 22.3763306486277
Replicate 32.65633326152
Condition 3: 24 Hour
Replicate 12.1597937113171
Replicate 22.0748849827372
Replicate 32.4404409406994


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62075.p1 GENE.R_Transcript_62075~~R_Transcript_62075.p1 ORF type:complete len:574 (+),score=85.42,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.057,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|9.8e-07,PPR_2|PF13041.2|5.1e-12,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|52,PPR_2|PF13041.2|0.00091,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|3.9e+02,PPR|PF01535.16|27,PPR|PF01535.16|0.55,PPR|PF01535.16|0.12,PPR|PF01535.16|9.5e-05,PPR|PF01535.16|6e-06,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|7.5e+02,PPR|PF01535.16|5.2,PPR|PF01535.16|0.034,PPR|PF01535.16|2.7e+02,PPR_1|PF12854.3|54,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|21,PPR_1|PF12854.3|3.4e-09,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|0.0025,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|85,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2.7,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.5e+03,TPR_14|PF13428.2|4,TPR_14|PF13428.2|17,TPR_14|PF13428.2|3.3e+02,TPR_14|PF13428.2|1.6e+03 R_Transcript_62075:286-2007(+)
ATGGCATTTGCTCGGCAAAGATTAGCGCCTTTCAATCTCATCATACGAGCCTCGTACAGGTACCCTTTTCTCCCTCCATTTCCATTCTCGTCATTTTCCTCTCTTCTAGAAAACCATGAACAAGAAGATAATTTCTCACACCTAGTCGTAGAAAACCAACCAAACCCTAACCCTAACCCTACTTTAGACGAATCGAAAGTGCTAGCCGAACTCTCCAATACATTACCAATTCGACGCACTACAACTCCAATCCCCAATCTCCTCTCTCCCGATTCATCCCTGATTCAAAACGAAGCCCAAATTAGGGTTTCTCCCGATGGGTTTTTACCGTTAGAAGATAAACTACGAGGAGTCTTTCTCCAAAAACTCAAGAGCAAAGCTCTAATAGAGAATGCCTTATCTACTGCTTTGGATGATGATGAGCTCTGTATTGATGTAGTTTCTAGGGTTTTAGATAGAGGAAACTTAGGAGGTGGAGATATGGTCTTGTTTTTTGATTGGGCAATTAAGCAACCTGGTATACGTAGAGACCTAGGTATGTATCATGTCATTCTTAAGGCCCTAGGTAGGAGGAAATTTCTAGATTTTATGGTGGGTAAGTTTAAGGAAATGGGTTTTGAGGGAATTAACCCTACTTGTGAGACACTTGTCATTGTAATGGATAGTTTTATTAGGGCCCGGTATGTGTCTCGAGCAGTTGAGATGTTTGGGAAACTTGAAGAGTTGGGGATGAAGTGTGATAGTGATGCCTTCAATGTGCTCTTAAGGTGTTTGTGTAAGAGGTATCATGTTGGCATGGCGAATTCCCTTTTAAATTCGATGAAGGGAAAAGTGGCTTTTGATTGTGCGAGTTATAATGTGGTGATTGGTGGGTGGTCGAGATTAGGTCGGATGAGTGAGATGGAGAAGTGTCTCAAAGCGATGGTGGAAGATGGGTTTAGAGCAGATTGTGAGACATATAGTTGTCTTATAGAGGGTTTGGGTAGAGCTGGTCGGATTGATGATGCTGTTAAGATTTTTGAAAGCATGGACAGTCAAGAGCTTCAGCCTGATACATGTGTTTATAATGCCATGATTTGTAACTATGTCGCAGTGGGTGATTTTGACGAATGTAAGAAGTATTATGAGGAAATGTTGAGAAAAAACTGTCCACCAGATTTGAATACCTTTACAAAACTAATTAGTGGTTTGCTTAAGGCTAGAAAAGTTGCTGATGCACTTGAATTGTTTGATGAAATGTTGCATCGAGGAGTTACTCCTACCACTGGGACTATAACTTCTTTCATTTATCCTTTGTGTAGTTATGGTCCTCCCCATGCTGCCATGATGATTTACAAAAGTGCTAGGAAAGCTGGATGTGAAATATCATCGGCAGCTTATAAAATGTTGCTTATGCGGAATTCTCATTTTGGTAAATTTGGAACTGTTCTGAAGTTGTGGAATGACATGCAAGAGTGTGGCTATTCGTCTGACATGGAAGTTTATGAGTATGTCATTAATGGTTTGTGCAACAATGGGCAGCTTGATGTGGCCGTCCTTGTGATGGAGGAGGCTTTACGCAAGGGGTTATGTCCAAGCAGGCCAATTTGTACCAAACTGAATAACAAACTTGTGGCTTTCAATAAAACAGAAAGAGCTTATAAGCTTTTCCTGAAAATAAAAGAAGCTCGTATAAATGAAAATGCCAGAAGATACTGGCGCGCTAATGGCTGGCACTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62075.p1 GENE.R_Transcript_62075~~R_Transcript_62075.p1 ORF type:complete len:574 (+),score=85.42,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.057,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|9.8e-07,PPR_2|PF13041.2|5.1e-12,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|52,PPR_2|PF13041.2|0.00091,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|3.9e+02,PPR|PF01535.16|27,PPR|PF01535.16|0.55,PPR|PF01535.16|0.12,PPR|PF01535.16|9.5e-05,PPR|PF01535.16|6e-06,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|7.5e+02,PPR|PF01535.16|5.2,PPR|PF01535.16|0.034,PPR|PF01535.16|2.7e+02,PPR_1|PF12854.3|54,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|21,PPR_1|PF12854.3|3.4e-09,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|0.0025,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|85,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.00033,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|2.7,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.5e+03,TPR_14|PF13428.2|4,TPR_14|PF13428.2|17,TPR_14|PF13428.2|3.3e+02,TPR_14|PF13428.2|1.6e+03 R_Transcript_62075:286-2007(+)
MAFARQRLAPFNLIIRASYRYPFLPPFPFSSFSSLLENHEQEDNFSHLVVENQPNPNPNPTLDESKVLAELSNTLPIRRTTTPIPNLLSPDSSLIQNEAQIRVSPDGFLPLEDKLRGVFLQKLKSKALIENALSTALDDDELCIDVVSRVLDRGNLGGGDMVLFFDWAIKQPGIRRDLGMYHVILKALGRRKFLDFMVGKFKEMGFEGINPTCETLVIVMDSFIRARYVSRAVEMFGKLEELGMKCDSDAFNVLLRCLCKRYHVGMANSLLNSMKGKVAFDCASYNVVIGGWSRLGRMSEMEKCLKAMVEDGFRADCETYSCLIEGLGRAGRIDDAVKIFESMDSQELQPDTCVYNAMICNYVAVGDFDECKKYYEEMLRKNCPPDLNTFTKLISGLLKARKVADALELFDEMLHRGVTPTTGTITSFIYPLCSYGPPHAAMMIYKSARKAGCEISSAAYKMLLMRNSHFGKFGTVLKLWNDMQECGYSSDMEVYEYVINGLCNNGQLDVAVLVMEEALRKGLCPSRPICTKLNNKLVAFNKTERAYKLFLKIKEARINENARRYWRANGWHF*

Click here to download the sequence:
Link to NCBI Protein BLAST