Transcript Information: R_Transcript_62176.p1


Annotated TAIR IDAT5G60250.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24252226-24254710 | Forward length=655
E-Value6E-137
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2162868890749
Replicate 25.1432797918994
Replicate 36.39257793381
Condition 2: 8 Hour
Replicate 15.8082749409744
Replicate 28.112319923779
Replicate 38.4707516228472
Condition 3: 24 Hour
Replicate 17.0475129164115
Replicate 25.915596570651
Replicate 38.1781966349492


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62176.p1 GENE.R_Transcript_62176~~R_Transcript_62176.p1 ORF type:complete len:645 (+),score=94.02,IBR|PF01485.17|2.9e+03,IBR|PF01485.17|1.9e+02,IBR|PF01485.17|8.4e+02,IBR|PF01485.17|2.1e-12,IBR|PF01485.17|1.3e-07,RVT_3|PF13456.2|2.4e-15 R_Transcript_62176:274-1935(+)
ATGGCGGCAACTTCACACAGCGACGAAGTGAAAGCTATCACAGAGCAAAGAGCAGAACTAATGAACGCCAAAACCCTAGAATCAGACCTAGACATGGCATTTCATCTCCAATTGGAGGAAGCCATGGCTGCTTCTCTCTCTCTCCTCCCCTCTTCTTCTTCTTCACCCCCTAAACCATCTCTAAACAACGACAACGATCGCGATGAATCGTTCAATATCACCGATTTTCAGAGCAAGGAGCTCGATAAGTTGGAGCAAGAAAGGCGAGACCGTGAATTGTGCGAAATTGAGGCGAAGCGATTGAGAGAAGATCTTTTTCGCCGGATTCACGATCAGAAACTTGCGATTGATATTCAACGTTTGCCTGATGATGATTGGGAGGAGTTTGGGGATGAGTTTGAGCGGCCTTTTGGTGAAGGCTCTTCCACTTCTGTACCTAATGTTAATTTCAGGTTGTATTTTAAAGGGTTGGTTAGTGTAGAAAGAGTTGAAGGTTCAAAGGTTACTCTGACTGGAATAGGAGTTGCAATTTGCAATCCGAAAGGTAATGTATTATTTAGTTTGAGCAAGCCATTGGTGGGGAGCGGGACGAGTCGTCAAGTAACTGAGATAAAGGCTTTGATTGAAGGCCTTGAAACAGCGATGGCTCTGGATTTAAAGCGCGTCACATTGCTTTGTGATTATCCTCCTGTTTACCAGTATGTTAGGCGAGTATGGCAACCAAAGTCGAAGAAGGTTGAGAAGCTAATGGCAAAAGTTGAACATCTTCAAAAACAATTTACTTACTGTCAGCCTTCTCTTGTTCCACGAAATAATATGCAGCTTGCATTTAAGCTTGCCAGAGATTCTATTGTCTCTCAGTTGTCTAGGCCTGTCGAGTCTAACCATGTTAAGGATTTGAAGGAGAGTTGTGTGATCTGCCTGGAAGAGACTGACCAGGATAAGATGTTCGTCATCGACAGTTGTCTGCATAGATACTGTTTCACTTGCATGAGGCAGCATGTCGAAGCAAAGCTACATAGTGGAATGTTACCCAAATGTCCTCATGAAAATTGTAAATCTGAGCTCAAGGTCATTAGCTGTGAGAAATTCTTGACACCGAAGCTAATTGAAATCCTGAAACAACGGATTAGAGAAGCATCTATTCCTGTTACAGAAAAAGTCTATTGCGTATATCCTAGGTGCTCTGCATTGATGTCAAAAAGTGAAATTTCTGACTTTGCGAGGATAGAAAAAGTCAAGGAAAGAATGTTTGGAGCGAGGAAATGTATGAAGTGTTATGGCCTTTTTTGTGTCAACTGTAAAGCCCCATGGCATAAAAACATGACTTGCTTAGAGTATAAGAGGTCAAATCCATATCCACGGCTTGAAGAACTGAAGCTTCAGTCACTTGCAACAAGGAATTCGTGGTGCCAATGTGTGAAGTGCAAGCATATGATTGAACTTGTCGAAGGTTGCTACCACATGACTTGCAGATGTGGGTATGAGTTCTGCTACAACTGTGGAGCAGAGTGGAAGAACAAGAAGGCAACTTGTTCGTGTCCCCTTTGGGATGAAGAGAATATTTTGTTTGACGAGTCAGATTTTGAAGAAGAAGAAGACGATTATGATTACTATGAAGATGATGATTATTACTCTGACTCTGAGTCAGATTATCATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62176.p1 GENE.R_Transcript_62176~~R_Transcript_62176.p1 ORF type:complete len:645 (+),score=94.02,IBR|PF01485.17|2.9e+03,IBR|PF01485.17|1.9e+02,IBR|PF01485.17|8.4e+02,IBR|PF01485.17|2.1e-12,IBR|PF01485.17|1.3e-07,RVT_3|PF13456.2|2.4e-15 R_Transcript_62176:274-1935(+)
MAATSHSDEVKAITEQRAELMNAKTLESDLDMAFHLQLEEAMAASLSLLPSSSSSPPKPSLNNDNDRDESFNITDFQSKELDKLEQERRDRELCEIEAKRLREDLFRRIHDQKLAIDIQRLPDDDWEEFGDEFERPFGEGSSTSVPNVNFRLYFKGLVSVERVEGSKVTLTGIGVAICNPKGNVLFSLSKPLVGSGTSRQVTEIKALIEGLETAMALDLKRVTLLCDYPPVYQYVRRVWQPKSKKVEKLMAKVEHLQKQFTYCQPSLVPRNNMQLAFKLARDSIVSQLSRPVESNHVKDLKESCVICLEETDQDKMFVIDSCLHRYCFTCMRQHVEAKLHSGMLPKCPHENCKSELKVISCEKFLTPKLIEILKQRIREASIPVTEKVYCVYPRCSALMSKSEISDFARIEKVKERMFGARKCMKCYGLFCVNCKAPWHKNMTCLEYKRSNPYPRLEELKLQSLATRNSWCQCVKCKHMIELVEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWDEENILFDESDFEEEEDDYDYYEDDDYYSDSESDYH*

Click here to download the sequence:
Link to NCBI Protein BLAST