Transcript Information: R_Transcript_62195.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value3.4E-58
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.295282515264
Replicate 20.50290539919277
Replicate 32.6061557744125
Condition 2: 8 Hour
Replicate 11.319597512127
Replicate 21.33897496055
Replicate 32.4999224207719
Condition 3: 24 Hour
Replicate 11.3747189956709
Replicate 21.5848090220774
Replicate 31.3106409992154


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62195.p1 GENE.R_Transcript_62195~~R_Transcript_62195.p1 ORF type:5prime_partial len:167 (+),score=44.42,Syntaxin_2|PF14523.2|1.2e-10,Syntaxin_2|PF14523.2|14,Syntaxin|PF00804.21|3.7e-09 R_Transcript_62195:1-501(+)
AAGCTCAAGGAAGCCAGTGAAACAGATCTGCATTTTGAAGTCAGTGCTAGCAAGAAGATTGCTGATGCTAAACTTGCAAAAGATTTCCAGGCAGTTCTTAAGGAATTCCAAAAGGCACAGAGACTTGCAGCTCAAAGAGAAACTGCTTATTCTCCCTTTGTTCCAAAGGAATTGCCTTCATCTCGGTCCAATTTAGATGATGAGGAGGTAGACTCATTTCAGAGACAGGAGCAGCAGGCCCAGCTATTGCACTCCAGAAGAGAGGAGGTAGTACTTCTAGACAATGAGCTTCTTTTTAATGAAGCCGTTATCGAAGAAAGAGAGCAAGGAATTCAGGAAATCCAACAACAGATTGGTGAAGTGAATGAGATCTTTAAAGACCTCGCGGTGCTAGTCCAGGATCAGGGTGTCTTGATAGGCAGGCATTTTATCTGTTCACAATGTGTTGTTCTCCCTCATGATTATTCTGCACTAAAAATTGGTTTACCTCATTTCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62195.p1 GENE.R_Transcript_62195~~R_Transcript_62195.p1 ORF type:5prime_partial len:167 (+),score=44.42,Syntaxin_2|PF14523.2|1.2e-10,Syntaxin_2|PF14523.2|14,Syntaxin|PF00804.21|3.7e-09 R_Transcript_62195:1-501(+)
KLKEASETDLHFEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAQRETAYSPFVPKELPSSRSNLDDEEVDSFQRQEQQAQLLHSRREEVVLLDNELLFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVQDQGVLIGRHFICSQCVVLPHDYSALKIGLPHFR*

Click here to download the sequence:
Link to NCBI Protein BLAST