Transcript Information: R_Transcript_62196.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value9.3E-122
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 161.886863966911
Replicate 255.17276021801
Replicate 362.784525309162
Condition 2: 8 Hour
Replicate 149.597281188763
Replicate 259.982657493691
Replicate 360.417039729171
Condition 3: 24 Hour
Replicate 155.383615246396
Replicate 253.689261605894
Replicate 352.802090503792


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62196.p1 GENE.R_Transcript_62196~~R_Transcript_62196.p1 ORF type:complete len:274 (+),score=54.83,Syntaxin_2|PF14523.2|3.2e-32,Syntaxin_2|PF14523.2|56,SNARE|PF05739.15|7.1e-14,Syntaxin|PF00804.21|4.7e-10 R_Transcript_62196:223-1044(+)
ATGAGTTTTGCAGATTTGGAAGTAGGTAGGCCTTTGCCTACAAGGAAGCAACAACAGCAAAAGGACAAAGACCCCTCAAACGCAGTGGCCGCCGGAATATTCCAGATAAATACGGCTGTCTCCACCTTTCAACGCCTTGTTAACACCCTTGGCACCCCTAAGGATACCCTTGACCTTCGTGATCGACTTCGTAAGACAAGGGTACATATTAGTCAGCTGGTTAAAGAAACCGCTGCAAAGCTCAAGGAAGCCAGTGAAACAGATCTGCATTTTGAAGTCAGTGCTAGCAAGAAGATTGCTGATGCTAAACTTGCAAAAGATTTCCAGGCAGTTCTTAAGGAATTCCAAAAGGCACAGAGACTTGCAGCTCAAAGAGAAACTGCTTATTCTCCCTTTGTTCCAAAGGAATTGCCTTCATCTCGGTCCAATTTAGATGATGAGGAGGTAGACTCATTTCAGAGACAGGAGCAGCAGGCCCAGCTATTGCACTCCAGAAGAGAGGAGGTAGTACTTCTAGACAATGAGCTTCTTTTTAATGAAGCCGTTATCGAAGAAAGAGAGCAAGGAATTCAGGAAATCCAACAACAGATTGGTGAAGTGAATGAGATCTTTAAAGACCTCGCGGTGCTAGTCCAGGATCAGGGTGTCTTGATAGATGACATTAGTTCACACATTGAGAATTCCCATGCTGCAACTTCACAAGGAACTGCGCATCTTGTTAAAGCTGCCAGGGCCCAAAGATCCAGTTCATCTCTGGTATGTCTGCTTTTAGTGATTTTTGGGATCATCCTACTCATTGTGATCATAGTGGTCGTTTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62196.p1 GENE.R_Transcript_62196~~R_Transcript_62196.p1 ORF type:complete len:274 (+),score=54.83,Syntaxin_2|PF14523.2|3.2e-32,Syntaxin_2|PF14523.2|56,SNARE|PF05739.15|7.1e-14,Syntaxin|PF00804.21|4.7e-10 R_Transcript_62196:223-1044(+)
MSFADLEVGRPLPTRKQQQQKDKDPSNAVAAGIFQINTAVSTFQRLVNTLGTPKDTLDLRDRLRKTRVHISQLVKETAAKLKEASETDLHFEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAQRETAYSPFVPKELPSSRSNLDDEEVDSFQRQEQQAQLLHSRREEVVLLDNELLFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVQDQGVLIDDISSHIENSHAATSQGTAHLVKAARAQRSSSSLVCLLLVIFGIILLIVIIVVVF*

Click here to download the sequence:
Link to NCBI Protein BLAST