Transcript Information: R_Transcript_62291.p1


Annotated TAIR IDAT5G42310.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16915860-16918238 | Forward length=709
E-Value2E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2707617895739
Replicate 21.8609437748549
Replicate 33.1336770121904
Condition 2: 8 Hour
Replicate 12.6891990404489
Replicate 23.4036795095446
Replicate 33.3575233517479
Condition 3: 24 Hour
Replicate 13.5830103765781
Replicate 22.2947668209849
Replicate 33.5846915190487


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62291.p1 GENE.R_Transcript_62291~~R_Transcript_62291.p1 ORF type:complete len:519 (+),score=88.96,PPR_2|PF13041.2|5.8e-09,PPR_2|PF13041.2|8.4e-08,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|5.2e-05,PPR_2|PF13041.2|0.09,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|37,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0018,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|0.012,PPR|PF01535.16|1.2,PPR|PF01535.16|0.024,PPR|PF01535.16|0.00016,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|8.4,PPR|PF01535.16|0.044,PPR|PF01535.16|0.0004,PPR|PF01535.16|0.0041,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|2.6e-07,PPR_1|PF12854.3|0.86,PPR_1|PF12854.3|48,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|40,PPR_1|PF12854.3|0.00041,PPR_1|PF12854.3|0.0022,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.023,ECSIT|PF06239.7|35,ECSIT|PF06239.7|36,ECSIT|PF06239.7|1.9e+02,ECSIT|PF06239.7|8.8,ECSIT|PF06239.7|2.9e+02,ECSIT|PF06239.7|0.013,ECSIT|PF06239.7|3.9e+02,MRP-S27|PF10037.5|20,MRP-S27|PF10037.5|0.0025,MRP-S27|PF10037.5|52,Clathrin|PF00637.16|1.2e+03,Clathrin|PF00637.16|15,Clathrin|PF00637.16|4.6,Clathrin|PF00637.16|17,Clathrin|PF00637.16|32,Clathrin|PF00637.16|2.2e+02 R_Transcript_62291:348-1904(+)
ATGCCGGCAATTGAATTTCTTTCTTCTCCAAAAATGGAATTCCAATTCATTTCCTCAATTTGCACCCGGTATCCCATTTTCTCACAATTTTCTACTAATTTTCCCAGTAACACAAATAGACCCATTATCAATGTTTGCTCTTGCATTCCAATTTGTAAATCTCAATCCCCTAAAACTAATGAGAAGATACCCACTTGTGCTGCTACTTCATTTATGGACTACCCACTTGGAAAAGAGCTATCTTTAGAGTATTATAGTGAAAGTATTAGTAACTTATGTAGGAAAGGATGTGTTGATGAGGCTATGTCATGTTTATCAAAAATGCAAGCATCGGGTTTCCACCCTAATATGTTTTGCTATTCTTGTTTGATTGAGGCTCTTTGTAGAGTTGGTAGAACCCTTGAAGCTGATATGGTTTTCCAAGAAATGATGTTTTTCGGGTTGAGACCGAAAGTTGGGCTTTTTAATGTTTTGCTTAGAGGGTTCTTGAGGAAAGGCATGTTAGAGCTTGGGGTTCGAGTTTTGAGGGCAATGGATGAACTTGGTGTTCATAAGAATCAAGAAACATTTGAGATTTTCTTGGATTATTATGTGAGTGCTGGGAGGTTAAGTGATACTTGGCAGGTTATTGGTGAGATGAAGAAGAAAGGGTACCGATCTAATTCATTTGTTTATAGTCGGATTATTGAACTCTATAGAGATAATGGTATGTGGAAGAAGGCAATGGAGATTATAGGGGATATAAGGGAGTCAGGGGTGCCTGTTGATAGACGGATTTATAATAGCATCGTTGATACGTTTGGTAAATATGGTGAGCTCGAACAAGCCTTGGAAGTTCTTGCCAAGATGCGGAAAGACGGTATAATGCCAGATATAATGACATGGAATTCTTTGATAAAATGGCACTGTAAGGCCGGAGATTATATGAAGGCACTTGATTTGTTCACTGAAATGCAAGATCAAGGATTGTATCCTGATCCGAAGATATTTGTTGTAATGATCAGTCGAATAGGAGAGCAAGGGAAGTGGGATCTGTTGAAAGAGAACTTTGAGAAACTGAAGCGTAGAGGCCATAAAAAGAGTGGAGCAATATATGCAGTTCTAGTTGATATATACGGTCAGTATGGGAGATATCAGGGGGCTGAAGATTGCATATCTGCTTTGAGAGCAGAAGGTATTCAGCTGTCATCTAACATATTTTCTGTATTGGCGAATGCATATGCTCAACAGGGATTATGTGAAGAGACTGTTAAGGTACTCCAGATCATGGAAGCAGAAGGTATCGAACCAAACCTTATAATGCTCAATGTCTTGATCAATGCATTTGGCACCGCGGGGAGACATCTCGAAGCACTTTCTGTATTCAACTATATCATAGAAAGTGGCATTACTCCAGATGTTGTTACATACACCACTCTCATGAAAGCTTTTATCAGGGCAAAGAAATTCAGTCAGGTTCCAGAAATGTACCTCCAGATGGAGACGGTTGGATGTACTCCTGATAGGAAGGCCAGGGAAATGCTCCAGACTGCACTAATGTCCCTTGAGCAGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62291.p1 GENE.R_Transcript_62291~~R_Transcript_62291.p1 ORF type:complete len:519 (+),score=88.96,PPR_2|PF13041.2|5.8e-09,PPR_2|PF13041.2|8.4e-08,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|5.2e-05,PPR_2|PF13041.2|0.09,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|1.4e-13,PPR_2|PF13041.2|37,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0018,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|0.012,PPR|PF01535.16|1.2,PPR|PF01535.16|0.024,PPR|PF01535.16|0.00016,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|8.4,PPR|PF01535.16|0.044,PPR|PF01535.16|0.0004,PPR|PF01535.16|0.0041,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|2.6e-07,PPR_1|PF12854.3|0.86,PPR_1|PF12854.3|48,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|40,PPR_1|PF12854.3|0.00041,PPR_1|PF12854.3|0.0022,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.023,ECSIT|PF06239.7|35,ECSIT|PF06239.7|36,ECSIT|PF06239.7|1.9e+02,ECSIT|PF06239.7|8.8,ECSIT|PF06239.7|2.9e+02,ECSIT|PF06239.7|0.013,ECSIT|PF06239.7|3.9e+02,MRP-S27|PF10037.5|20,MRP-S27|PF10037.5|0.0025,MRP-S27|PF10037.5|52,Clathrin|PF00637.16|1.2e+03,Clathrin|PF00637.16|15,Clathrin|PF00637.16|4.6,Clathrin|PF00637.16|17,Clathrin|PF00637.16|32,Clathrin|PF00637.16|2.2e+02 R_Transcript_62291:348-1904(+)
MPAIEFLSSPKMEFQFISSICTRYPIFSQFSTNFPSNTNRPIINVCSCIPICKSQSPKTNEKIPTCAATSFMDYPLGKELSLEYYSESISNLCRKGCVDEAMSCLSKMQASGFHPNMFCYSCLIEALCRVGRTLEADMVFQEMMFFGLRPKVGLFNVLLRGFLRKGMLELGVRVLRAMDELGVHKNQETFEIFLDYYVSAGRLSDTWQVIGEMKKKGYRSNSFVYSRIIELYRDNGMWKKAMEIIGDIRESGVPVDRRIYNSIVDTFGKYGELEQALEVLAKMRKDGIMPDIMTWNSLIKWHCKAGDYMKALDLFTEMQDQGLYPDPKIFVVMISRIGEQGKWDLLKENFEKLKRRGHKKSGAIYAVLVDIYGQYGRYQGAEDCISALRAEGIQLSSNIFSVLANAYAQQGLCEETVKVLQIMEAEGIEPNLIMLNVLINAFGTAGRHLEALSVFNYIIESGITPDVVTYTTLMKAFIRAKKFSQVPEMYLQMETVGCTPDRKAREMLQTALMSLEQR*

Click here to download the sequence:
Link to NCBI Protein BLAST