Transcript Information: R_Transcript_62438.p1


Annotated TAIR IDAT1G48790.1
Annotated Gene Nameassociated molecule with the SH3 domain of STAM 1
Annotated Gene Symbol(s)AMSH1
Annotation TypeOrtholog
Chromosome Positionchr1:18043925-18047427 | Reverse length=507
E-Value5.8E-207
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.135075605692
Replicate 215.400010227518
Replicate 318.494739498839
Condition 2: 8 Hour
Replicate 116.196875646038
Replicate 220.446720749722
Replicate 322.813113736907
Condition 3: 24 Hour
Replicate 118.357312783242
Replicate 212.701082940877
Replicate 317.629396382053


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62438.p1 GENE.R_Transcript_62438~~R_Transcript_62438.p1 ORF type:complete len:514 (+),score=78.38,JAB|PF01398.17|7.4e+03,JAB|PF01398.17|4.6e-17,USP8_dimer|PF08969.7|6e-11,Prok-JAB|PF14464.2|4.2e-06 R_Transcript_62438:259-1800(+)
ATGAGGCCATCCTCTAGACGTATTGACATTGGCGCTAGTGCTCAGAAACTCGATGTCGATCATCGTTTTTCTGTCCGTATCTACTTCCGGATTGCCGACAATATCCTCAGACAGGCTGCTATCTTTCGGAATGAGAAGAATGTTATCGATCTTTATGTTATGCTTCTAAGATTTTCGAGTCTGGTATCTGAGACTATTCCACGGCATCGAGATTATGCGGCCTCACCACAGAGCAAACGAAGTTCTTTAAGAAAGCAATTGTTACTTGCTTTGAATGAACTAGAGACATTGAAGCCTGCTGTTAAGAAGAAAGTTGAAGAACTGGAAAGAAAACCTGCATACCAAGCAATTGGATGGAACCAGAACTACCATCACAATGAGAATCATTCTCTAGGGTCCTCCATTGAATGGCCTGCCAGTAACATGTGGTCTTCAACGAATAATAAATTAACTAAGGCATCATGGAAAATTTCAGGGGATTTGCCTAGTGCTCAGCACAAATTGAATGGTGTGCCTGTGGATGAGACATTTCGCAGACTATCCCTAAACTTCCCTCGTCCAAAGGAGGAAACTCTGTCGAAACATTCTATTCTGGGGCCAAAAGGACTTTCTGGGCAATGGCATCCACCTGTCAATAGAAAAGGGGTCCGGTACCCTAGTGATATTGATCTGACTCCTGTTGAGATCCCGAGGATCCAAGAAGTGGTGAGTGGTGAAGATGAAGTAGCAGTAAGAAAAGATGATAGCACCTTGGATTCTAAAAAGCCAAGATTGGAGCCAATCCTTGAACGTAATGATGATAGTCAGAAGCCACAAACTAATGAGCAGCCCATGATTTCCTTTGAATGTTCTGATCCACCAGATACAGTTATCTGTAAGCAACCTACCCCTCCAGCTATACTTGCAGAGGTCCATGACCTGGTTCCTGCAGACGCTGCTGTAGCTATGGAGAAACAAGATGTACCAGATAGTTCTCTGCAAGATGGTTTGCTTCGTCAGGAATCACCTATGGAGCTACATATCTCAACTAGTATGATGGATACCTTCATGAGGTTGGCGAAATCTAACACTGTTAAAAATTTGGAAACATGTGGAATTCTTGCCGGTTCACTTAAGAACAGGAAGTTCTATATTACAGCTTTGATAATTCCAAAGCAAGAGTCAACCTCAGATTCTTGTCAGGCCACAAATGAGGAGGAGATTTTTGAAGTGCAGGACAAACGATCCCTTTTTCCGTTGGGATGGATTCATACTCATCCCACACAATCTTGTTTCATGTCATCAATCGATGTCCACACTCATTACTCATATCAGGTCATGTTACCTGAAGCAGTAGCAATAGTTATGGCGCCAAGGGATAATAGCAAAAACCATGGCATTTTCCGCTTGACGACTCCTGGAGGCATGTCAGTTATTAGAAATTGTGAACGCCGTGGATTTCATCATCATGAACCACCCATTGATGGTGGGCCCATATACAGTCAGTGTACAGATGTATATACGAACCCCAAGCTGAAATTTGATGTTATAGACCTTAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62438.p1 GENE.R_Transcript_62438~~R_Transcript_62438.p1 ORF type:complete len:514 (+),score=78.38,JAB|PF01398.17|7.4e+03,JAB|PF01398.17|4.6e-17,USP8_dimer|PF08969.7|6e-11,Prok-JAB|PF14464.2|4.2e-06 R_Transcript_62438:259-1800(+)
MRPSSRRIDIGASAQKLDVDHRFSVRIYFRIADNILRQAAIFRNEKNVIDLYVMLLRFSSLVSETIPRHRDYAASPQSKRSSLRKQLLLALNELETLKPAVKKKVEELERKPAYQAIGWNQNYHHNENHSLGSSIEWPASNMWSSTNNKLTKASWKISGDLPSAQHKLNGVPVDETFRRLSLNFPRPKEETLSKHSILGPKGLSGQWHPPVNRKGVRYPSDIDLTPVEIPRIQEVVSGEDEVAVRKDDSTLDSKKPRLEPILERNDDSQKPQTNEQPMISFECSDPPDTVICKQPTPPAILAEVHDLVPADAAVAMEKQDVPDSSLQDGLLRQESPMELHISTSMMDTFMRLAKSNTVKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQVMLPEAVAIVMAPRDNSKNHGIFRLTTPGGMSVIRNCERRGFHHHEPPIDGGPIYSQCTDVYTNPKLKFDVIDLR*

Click here to download the sequence:
Link to NCBI Protein BLAST