Transcript Information: R_Transcript_62733.p1


Annotated TAIR IDAT2G18790.1
Annotated Gene Namephytochrome B
Annotated Gene Symbol(s)PHYB, HY3, OOP1
Annotation TypeOrtholog
Chromosome Positionchr2:8140079-8144151 | Forward length=1172
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.5787662355294
Replicate 25.1840423151745
Replicate 37.7031506960513
Condition 2: 8 Hour
Replicate 18.1475090443931
Replicate 210.171232979088
Replicate 312.192099522897
Condition 3: 24 Hour
Replicate 111.052254099001
Replicate 210.071250962423
Replicate 311.040700594276


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62733.p1 GENE.R_Transcript_62733~~R_Transcript_62733.p1 ORF type:complete len:1130 (+),score=269.94,PHY|PF00360.16|4.8e-59,PAS|PF00989.20|6.7e+02,PAS|PF00989.20|2.6e-22,PAS|PF00989.20|1.6e-23,PAS_2|PF08446.7|3e-42,GAF|PF01590.22|5.1e-33,PAS_9|PF13426.2|1.6,PAS_9|PF13426.2|2.5e-05,PAS_9|PF13426.2|0.12,HATPase_c|PF02518.22|36,HATPase_c|PF02518.22|3.4e-10,PAS_4|PF08448.6|4.8e+03,PAS_4|PF08448.6|2.8e-07,PAS_4|PF08448.6|12,HisKA|PF00512.21|1.5e+04,HisKA|PF00512.21|4.8e-09,HisKA|PF00512.21|1.8e+03,PAS_8|PF13188.2|6.6,PAS_8|PF13188.2|1.4,PAS_8|PF13188.2|1 R_Transcript_62733:341-3730(+)
ATGGCTTCAGGTACTAAGGCATCAAATGCAAGTACAAGTAATAATAATGCAAGAATGAGCAAAAATAACATAAACCCATCAGATTCAATCAGCAAACAAATAGCTCAATACACAGAGGATGCTCGATTACATGCTGTATTTGAGCAATCTGGTGAATCTGGTAAGTCTTTTGATTACTCACAGTCAGTTAGAACAACTACACAATCTGTTCCTGAGCAACAAATCACTGCTTATTTGTCTAAAATTCAAAGGGGTGGAAATATTCAGCCTTTTGGATGTATGATTGCTATTGATGAGACTAGTTTTAGGGTCATTGCTTTTAGTCAAAATGCTTTAGAAATGTTGGGTTATAACCCTCAAAGTGTGCCTAATTTTGAGGAAAGATTAGAGCTTTTGACTATTGGTACTGATGTTAGAAACCTTTTTATGCCTTCTAGTTCTGTGCTTCTAGAAAAGGCTTTTGGGGCTAGGGAAATTACCCTCTTAAACCCTGTTTGGATTCATTCTAAGGTTTCTGGTAAACCCTTTTATGCAATTTTGCATAGGATTGATGTTGGGATTGTTATTGATCTTGAGCCTGCTAGGACTGAGGACCCTGCTTTGTCTATTGCTGGGGCTGTTCAGTCTCAGAAACTTGCTGTTAGGGCTATTTCCCATTTACAGTCCTTACCTGGTGGGGATATTAAGCTCTTGTGTGATACTGTGGTTGAGAGTGTGAGGGAGCTTACCTGTTATGACCGCGTTATGGTGTACAAGTTCCATGAGGATGAGCATGGGGAGGTTGTGGCCGAGACTAAACGGCCTGATTTGGAGCCGTATATTGGCTTGCATTATCCTGCTATCGATATTCCTCAGGCTTCGAGGTTTTTGTTCAAGCAGAATCGTGTTAGGATGATCGTTGATTGTCATGCCAAACCTGTTCCTGTGGTTCAGGATCAGCGGCTTCAGCAGCCTCTTTGCTTGGTTGGTTCGACCCTTAGGGCTCCTCATGGTTGTCATTCTCAGTATATGGCTAATATGGGCTCAATTGCGTCGTTAGTTATGGCTGTGATCATCAATGGGAATGATGATGAGGCTACGAGTGGTAGGAACTCGATGAGATTGTGGGGTTTGGTCGTATGCCATCATACTTCTCCTCGGTCTATCCCTTTTCCGTTGAGATATGCTTGCGAGTTCTTGATGCAGGCATTTGGGCTCCAGTTGAACATGGAGTTGCAGCTTGCATCACAGATGTTGGAGAAACGTGTACTGAGGACTCAAACCCTTTTATGTGATATGCTTCTCCGAGACTCTCCAACTGGGATTGTCACTCAAAGCCCTAGTATCATGGATCTTGTGAAGTGTGATGGGGCAGCACTCTTCTGTCATGGGAAGTACTATCCATTAGGTGTGAGCCCGACTGAGACCCAAATAAAAGATATTGTGCAGTGGTTGTTGACTCACCATGGCGATTCAACTGGCCTGAGCGCCGATAGTTTGGCTGATGCTGGGTACCCTGGGGCTGCAGCGCTGGCTGATGCTGTTTGTGGGATGGCTGTTGCTTACATCACTCAACAAGATTTCCTTTTCTGGTTTCGATCACACACGGCAAAAGAAATCAAGTGGGGCGGTGCAAAGCATCATCCTGAGGATAAGGATGATGTGCAAAGGATGCATCCACGTTCGTCATTTAAAGCCTTTCTGGAAGTCGTCAAAAGTCGGAGTTTACCATGGGAGAATGCGGAGATGGATGCAATTCATTCTTTGCAGCTTATATTGCGAGACTCGTTTAGGGATGCTGAGGCTAACAATTCCAGGGCAGTTGTACAAGCTCAAGCCATGGAGTTAGAGCTACAAGAGATGGATGAGCTTAGTTCGGTTGCAAGAGAAATGGTTAGGTTGATCGAAACTGCCACTGCACCAATATTTGCTGTTGGTGCTGATGGCTGCATAAATGGGTGGAACGCGAAGGTTGCAGAGTTGACAGGGCTCTCTGTGGAGGAAGCCATGGGAAAATCCTTGGTTCATGACCTTATTTATAAGGAGTTTGAAGAAGCTGTTCAGGAGCTTCTGGATCACGCTTTAAGAGGCCAAGAAGACAAGAATGTAGAGATAAAGTTGAGGACATTTGGTTCAGAGCCTTATGACAAAGCTGTTTACATTGTTGTCAATGCTTGCTCCCGCAAAGATCATACTAACAAAATTGTGGGAGTATGTTTTGTTGGCCAGGATGTTACAGCTCAGAAAGTTGTCATGGATAAATTCATCAATATACAGGGTGATTACAAGGCTATTGTTCACAGTCCGAATCCTTTGATCCCGCCTATATTTGCTGCAGATGTGAACACATGTTGCACTGAGTGGAACACCGCCATGGAAAAGCTCACTGGCTGGAGCAGAGGAGAAGTTATGGGAAAGATGTTGGTTGGTGAGATCTTTGGTGCTTGCTGCCGACTTAAGGGTCAAGATGCGTTGACCAAATTCATGATTGTTTTGCATGGTACAATTGGAGGGCAAGACAGTGATAAATTTCCATTTTCCTTCTATGACCGCAATGGGAAATTTGTGCAAGCTCTCTTGACTGCAAATAAGAGAGTTGATGTGAGTGAGCAAATTACTGGAGCATTCTGCTTTTTGCAGATAGCAAGTCCTGAGGTGCAGCATGCTTTGAAAGTTCAGAGACAAGAAGAAAGAAAATGCTTCGAGAGGATGAAAGACTTGGCTTACCTATGTCAAGAAATAAAAAATCCGCTAAATGGTATACATTTCACTAATTCTCTTTTGGAAGCTACTGATTTGACTGAAGATCAGAAGCAGTTTATCGAGACAAGCCATGCTTGTGAGAAACAAATTCACAAGCTTATAGGAGATGTGCATTTGGAAAGCATTGACAATACTTCTTTGGAGCTGGAGAAGGCTGAATTTATGTTGGGAAGTGTCATAAATGCTGTTGTCAGCCAAGTGATGATATTGCTTCGCGAAAGAGGCTTACAGTTGATCAGGGATATTCCAGAAGAAATAAAAAGCTTGGCTGTTTGTGGGGATCAAGTCAGAATTCAGCAGATCTTGGCAGAGTTCTTGGTAAATATGGTTCGTTATGCACCATCCCCTGATGGCTGGGTGGAGATTCATGTTCGACCAAGACTAAAACAGATTTGTGATGGGCTGAATGTTGTTTATATTGAATTCAGGCTGGTATGCCCCGGTGAAGGGCTTCCCCCGGATTTAGTTCAAGACATGTTCCACAACAGTCGATGGGTGACTCAGGAAGGCCTTGGATTGAGCATGTGCAGGAAGATTCTTCGGCTTATGAACGGTGAAGTTCAATACATCCGAGAGTCGGAAAGAAGTTACTTCCTCATCATACTCGAGCTTCCTATTCCGCGCAGAGGCTTAAAGGGTGTCGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62733.p1 GENE.R_Transcript_62733~~R_Transcript_62733.p1 ORF type:complete len:1130 (+),score=269.94,PHY|PF00360.16|4.8e-59,PAS|PF00989.20|6.7e+02,PAS|PF00989.20|2.6e-22,PAS|PF00989.20|1.6e-23,PAS_2|PF08446.7|3e-42,GAF|PF01590.22|5.1e-33,PAS_9|PF13426.2|1.6,PAS_9|PF13426.2|2.5e-05,PAS_9|PF13426.2|0.12,HATPase_c|PF02518.22|36,HATPase_c|PF02518.22|3.4e-10,PAS_4|PF08448.6|4.8e+03,PAS_4|PF08448.6|2.8e-07,PAS_4|PF08448.6|12,HisKA|PF00512.21|1.5e+04,HisKA|PF00512.21|4.8e-09,HisKA|PF00512.21|1.8e+03,PAS_8|PF13188.2|6.6,PAS_8|PF13188.2|1.4,PAS_8|PF13188.2|1 R_Transcript_62733:341-3730(+)
MASGTKASNASTSNNNARMSKNNINPSDSISKQIAQYTEDARLHAVFEQSGESGKSFDYSQSVRTTTQSVPEQQITAYLSKIQRGGNIQPFGCMIAIDETSFRVIAFSQNALEMLGYNPQSVPNFEERLELLTIGTDVRNLFMPSSSVLLEKAFGAREITLLNPVWIHSKVSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTCYDRVMVYKFHEDEHGEVVAETKRPDLEPYIGLHYPAIDIPQASRFLFKQNRVRMIVDCHAKPVPVVQDQRLQQPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIINGNDDEATSGRNSMRLWGLVVCHHTSPRSIPFPLRYACEFLMQAFGLQLNMELQLASQMLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFCHGKYYPLGVSPTETQIKDIVQWLLTHHGDSTGLSADSLADAGYPGAAALADAVCGMAVAYITQQDFLFWFRSHTAKEIKWGGAKHHPEDKDDVQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEANNSRAVVQAQAMELELQEMDELSSVAREMVRLIETATAPIFAVGADGCINGWNAKVAELTGLSVEEAMGKSLVHDLIYKEFEEAVQELLDHALRGQEDKNVEIKLRTFGSEPYDKAVYIVVNACSRKDHTNKIVGVCFVGQDVTAQKVVMDKFINIQGDYKAIVHSPNPLIPPIFAADVNTCCTEWNTAMEKLTGWSRGEVMGKMLVGEIFGACCRLKGQDALTKFMIVLHGTIGGQDSDKFPFSFYDRNGKFVQALLTANKRVDVSEQITGAFCFLQIASPEVQHALKVQRQEERKCFERMKDLAYLCQEIKNPLNGIHFTNSLLEATDLTEDQKQFIETSHACEKQIHKLIGDVHLESIDNTSLELEKAEFMLGSVINAVVSQVMILLRERGLQLIRDIPEEIKSLAVCGDQVRIQQILAEFLVNMVRYAPSPDGWVEIHVRPRLKQICDGLNVVYIEFRLVCPGEGLPPDLVQDMFHNSRWVTQEGLGLSMCRKILRLMNGEVQYIRESERSYFLIILELPIPRRGLKGVD*

Click here to download the sequence:
Link to NCBI Protein BLAST