Transcript Information: R_Transcript_62803.p1


Annotated TAIR IDAT2G15790.1
Annotated Gene Namepeptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
Annotated Gene Symbol(s)SQN, CYP40
Annotation TypeHomolog
Chromosome Positionchr2:6878144-6880743 | Reverse length=361
E-Value4E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9203633877938
Replicate 24.0166835579005
Replicate 33.7845914289295
Condition 2: 8 Hour
Replicate 12.9808879066212
Replicate 27.7776980317167
Replicate 35.0508829552381
Condition 3: 24 Hour
Replicate 17.3864249341309
Replicate 24.9864063578697
Replicate 34.3775409373795


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62803.p1 GENE.R_Transcript_62803~~R_Transcript_62803.p1 ORF type:complete len:115 (+),score=33.35,TPR_1|PF00515.24|47,TPR_1|PF00515.24|1.4e-09,TPR_2|PF07719.13|4.7e+02,TPR_2|PF07719.13|1.1e-08,TPR_11|PF13414.2|2.6,TPR_11|PF13414.2|9.8e-07,TPR_8|PF13181.2|1.1e+03,TPR_8|PF13181.2|4.7e-08,TPR_12|PF13424.2|0.00039,TPR_12|PF13424.2|0.03,TPR_16|PF13432.2|0.0034,TPR_16|PF13432.2|0.0077,TPR_14|PF13428.2|9.8,TPR_14|PF13428.2|4.1e-05 R_Transcript_62803:1160-1504(+)
ATGGAGACAATAGATGGAGAAAAGAGCTTGACTTTGAGGAAAATGAGGTGTCAGTTAAATACAAATGTCGCGGCCTGTAAGTTGAAGATGGGAGATATAGATGGAGCCTTGTGGGATACGGAATTAGCACTTCGTGATGAAGAAGATAATGTGAAGGCTCACTTCCGAAGGGGTCAGGCATACATTGCTCTCAGTGACATAGATGCAGCAGCTGAATGCTTCGGAAAAGCTCTGGAGCTAGAGCCAAATGATGGTACCATAAAGAGAGAACTTGCTGCAACAAGGAAAAAGATAGCTGATAGACACAATAAGGAGAAGAAAACATACACTAGAATGTTCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62803.p1 GENE.R_Transcript_62803~~R_Transcript_62803.p1 ORF type:complete len:115 (+),score=33.35,TPR_1|PF00515.24|47,TPR_1|PF00515.24|1.4e-09,TPR_2|PF07719.13|4.7e+02,TPR_2|PF07719.13|1.1e-08,TPR_11|PF13414.2|2.6,TPR_11|PF13414.2|9.8e-07,TPR_8|PF13181.2|1.1e+03,TPR_8|PF13181.2|4.7e-08,TPR_12|PF13424.2|0.00039,TPR_12|PF13424.2|0.03,TPR_16|PF13432.2|0.0034,TPR_16|PF13432.2|0.0077,TPR_14|PF13428.2|9.8,TPR_14|PF13428.2|4.1e-05 R_Transcript_62803:1160-1504(+)
METIDGEKSLTLRKMRCQLNTNVAACKLKMGDIDGALWDTELALRDEEDNVKAHFRRGQAYIALSDIDAAAECFGKALELEPNDGTIKRELAATRKKIADRHNKEKKTYTRMFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST