Transcript Information: R_Transcript_62864.p1


Annotated TAIR IDAT1G72270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27199733-27211122 | Reverse length=2845
E-Value5E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.67778069095
Replicate 26.9524173563901
Replicate 39.4559821864912
Condition 2: 8 Hour
Replicate 18.3781657104261
Replicate 29.2800127729424
Replicate 39.055770419884
Condition 3: 24 Hour
Replicate 110.439974147698
Replicate 29.4452985094304
Replicate 312.562479511244


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62864.p1 GENE.R_Transcript_62864~~R_Transcript_62864.p1 ORF type:complete len:453 (+),score=96.31,DDE_Tnp_4|PF13359.2|3.1e+02,DDE_Tnp_4|PF13359.2|1e-17 R_Transcript_62864:212-1570(+)
ATGGCTGCCACTCCTAAACCAACATCTTCTACTCCCACCACTAAAAAACCCCGTTCCACCAAACGCAAACCCAAACACCACCACCACCACCACCACCACAACCACAACACCATCACCACCACCGCCACCGCCACTGTCTCTTCCCTCATCCCCACCATAACATATGCACTCTCCCACACTCAATCCTTCACTCTCAACCATGACCTTCAACTCCTCCCTTCTCAATTCCTTACCCTTGAATCTTCCCTTCATTCTGCTTCCTTTTACCTTTCAAAGATCCAAACTTTACTCAAAATCAAACAACCCCAACAAATCCCATTTCCTATTTCTCCTTATTCTAATTGTTGGTTTGAAAGATTTCTCCTTTCTGCCTCAATAGAACAAGACCCCAGGTGGATTCAAACTTTTAGGATGTCAAAGCCCACTTTTTTACTCCTTAATGCTATTCTTTCCCACTATTTATCCTCTTCAATTCCCTCTATTTCCCCCAATTTTGCTCTTGGTGCTGCTCTTTATAGGCTTGCTCATAATGGGTCATTCTCATCTGTTGGTAAAAGATTTGGGATTTCCTCGCAAGATGCTTGTAGAGCTTTTTATGCTGTTTGTAAGATGGTTTGTGATCACTTGGGTGGTTATTTGGGTGATTTTGGGTCTGAAATGGGGAGAATTTTGGTGGGGTTTGAGGGGATTTCTTTGCCTAATTGTTGTGGGGTTTTAGGGTTTGGAAAGTTGCCAGTTGAAGGAGGGGTTTTGGGGGAAAATGGGTTTTTGATGGTTCAAGCTTTGGTTGATTCAGATGGGAGATTCTTAGATGTTTCTGCTGGTTGGCCTAGTACATTTAAACCTGATTTGGTTTTACAGCAAACAAGGCTTTTTTCAGGTGTTGAGGAATCTAAGGAGCTCTTGAATGGTTTGGCTTTAGAGATAAGTGATGGGATTTTGATGCCACAATACATATTGGGTGATTGTTGTTACCCTCTTTTGCCTTGGCTTTTAACCCCATTTTTAAAGAGGGGTGAAGGAGATGATTTGAGCTTAAAAGAGAAGGTTTTCAATGAAGTGCATAAGAGGGCAATGGGGTTTGTTGGAGCGGCTTTTGGGAGGGTTAGAGCTAATTGGAAGCTGCTTAATAGGAGGTGGAAAGAGGAGTGTATTGAGTTCTTGCCCTTCGTTATAACCACAGCTTGTTTGCTGAATAACTTCCTGATGAAGCATGGTGAGAAGCTATTGGATGGAGAGCCGGGGCTGTTTGTTGAGGCGCAGGATATGCCGGTTTATGATGGAGAGACGAATGAGAGCGCAGGGAAGACTAGGGACTTGCTAGCATCATATCTTAGCTTGGTAAGACAAAGAGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62864.p1 GENE.R_Transcript_62864~~R_Transcript_62864.p1 ORF type:complete len:453 (+),score=96.31,DDE_Tnp_4|PF13359.2|3.1e+02,DDE_Tnp_4|PF13359.2|1e-17 R_Transcript_62864:212-1570(+)
MAATPKPTSSTPTTKKPRSTKRKPKHHHHHHHHNHNTITTTATATVSSLIPTITYALSHTQSFTLNHDLQLLPSQFLTLESSLHSASFYLSKIQTLLKIKQPQQIPFPISPYSNCWFERFLLSASIEQDPRWIQTFRMSKPTFLLLNAILSHYLSSSIPSISPNFALGAALYRLAHNGSFSSVGKRFGISSQDACRAFYAVCKMVCDHLGGYLGDFGSEMGRILVGFEGISLPNCCGVLGFGKLPVEGGVLGENGFLMVQALVDSDGRFLDVSAGWPSTFKPDLVLQQTRLFSGVEESKELLNGLALEISDGILMPQYILGDCCYPLLPWLLTPFLKRGEGDDLSLKEKVFNEVHKRAMGFVGAAFGRVRANWKLLNRRWKEECIEFLPFVITTACLLNNFLMKHGEKLLDGEPGLFVEAQDMPVYDGETNESAGKTRDLLASYLSLVRQRD*

Click here to download the sequence:
Link to NCBI Protein BLAST