Transcript Information: R_Transcript_62867.p3


Annotated TAIR IDAT1G72270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27199733-27211122 | Reverse length=2845
E-Value2E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 21.3483862652668
Replicate 30.42030711185601
Condition 2: 8 Hour
Replicate 11.5724867397313
Replicate 20.82058281986002
Replicate 31.3322283024137
Condition 3: 24 Hour
Replicate 10.63186625397351
Replicate 21.6187345974736
Replicate 30.60241389046506


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62867.p3 GENE.R_Transcript_62867~~R_Transcript_62867.p3 ORF type:3prime_partial len:109 (+),score=21.89,DDE_Tnp_4|PF13359.2|4.8e-09 R_Transcript_62867:1023-1346(+)
ATGTTTCTGCTGGTTGGCCTAGTACATTTAAACCTGATTTGGTTTTACAGCAAACAAGGCTTTTTTTCAGGTGTTGAGGAATCTAAGGAGCTCTTGAATGGTTTGGCTTTAGAGATAAGTGATGGGATTTTGATGCCACAATACATATTGGGTGATTGTTGTTACCCTCTTTTGCCTTGGCTTTTAACCCCATTTTTAAAGAGGGGTGAAGGAGATGATTTGAGCTTAAAAGAGAAGGTTTTCAATGAAGTGCATAAGAGGGCAATGGGGTTTGTTGGAGCGGCTTTTGGGAGGGTTAGAGCTAATTGGAAGCTGCTTAATAGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62867.p3 GENE.R_Transcript_62867~~R_Transcript_62867.p3 ORF type:3prime_partial len:109 (+),score=21.89,DDE_Tnp_4|PF13359.2|4.8e-09 R_Transcript_62867:1023-1346(+)
MFLLVGLVHLNLIWFYSKQGFFSGVEESKELLNGLALEISDGILMPQYILGDCCYPLLPWLLTPFLKRGEGDDLSLKEKVFNEVHKRAMGFVGAAFGRVRANWKLLNR

Click here to download the sequence:
Link to NCBI Protein BLAST