Transcript Information: R_Transcript_62874.p1


Annotated TAIR IDAT1G33980.2
Annotated Gene NameSmg-4/UPF3 family protein
Annotated Gene Symbol(s)ATUPF3, UPF3
Annotation TypeOrtholog
Chromosome Positionchr1:12351719-12354401 | Forward length=484
E-Value1.1E-116
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.707553754877
Replicate 28.3232346271779
Replicate 315.103844909017
Condition 2: 8 Hour
Replicate 114.389103903262
Replicate 216.792933175552
Replicate 321.695152135921
Condition 3: 24 Hour
Replicate 118.796133009136
Replicate 213.707650943945
Replicate 317.571205157011


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62874.p1 GENE.R_Transcript_62874~~R_Transcript_62874.p1 ORF type:complete len:502 (+),score=125.33,Smg4_UPF3|PF03467.11|2.6e-49 R_Transcript_62874:311-1816(+)
ATGAAAGACCCGTTGAATCGAACCAAAGTAGTGATTCGACACTTGCCTCCAAACCTTTCTCAGTCTGCCTTTTTCGAACAAATCGATGTTCGCTTTGATGGCCGTTACAATTGGTCCTCTTTTCGCCCTGGCAAAATCAGTCACAAGAACCAGAGGTATGCGCGAGCTTATGTGAACTTCAACAGCCCTGGGGATGTTTTCGAGTTTGCCGAGTTCTTTAATGGCCATGTTTTTGTTAATGAAAAAGGTGCTCAATTTAAGGCTATAGTGGAGTATTCTCCATCTCAACGTGTTCCAAAACTTAATGCCAAGAAGGATGGTCGCGAAGGGACTCTTTACAAAGATCCTGAGTATGTGGAGTTCGTTGAGTGGATTTCTAAACCTGTTGAGAATCTCCCTAGTGCTGATATACAACTCGAGAGAAGAGAAGCAGAACGAGCAGGCGTTCAGGAAGCTCCTGTTGTGACACCTCTGATGGAGTATGTGCGGAAGAAGAGAGCTGCCAAGAGTGGCAATCAGCATGGAGCGGGCTCTGATGTTAAGGCTGGTGGAAGATCTGGAATGTCTCCAGGAAAGTCTCGATCAAGCAAGCAAGGATCTGAAAAGAAGAAGTATATTATGAAAGCTAGTGGCAAGAGCACTAATGGAAAAGACAAGTCAACTTACATTATATTGTCTCAAAGAGAGAATCAGTTGGATGCCTCTGGCAGAAAATCAGTGGAATCTGAAAGTGGAAGCGTGTCTCTTGATACACCAAAGAGAAAGTATCTGCTTGTGAAAGGGAAAGAGCAGGAAATTTCTCAGGCTTCTGATGTCATTATGCAACCTAAGGGGAGCAATTCTGGGGTTGAAGCTACGCCTGCTTCAGGTTCTTTTAAATTGAATCAGAGGTCTGATGCTAGTGGAAGAATTATCAGAAGTATACTAATGAAGGAAACGCGTCAAAATCAATCGTCCTCATCAGTCCAGACAGAGCAGAAGCTTCAAGGCATGAATGCAGAGAAGGGAAAGCGGCCACCTCGTCCCTCTAGTATGAGATCAGGTGGACAAACCTCCACCAATGAACAGTCTGTTGGTTCAGATTATGTTGGAAAACGGTATGCAGAAGACAAATCTCCAGGAAATGAATCACTTGGTTTTGGTGCTGGTCTTGAGAAACCAGACAGGCGTACAAGAAGTAGAGAGAGACTTGATCGTGGTGTCTGGACTCCTCGTCGATCTGACTCTTCTCATGCTAATGATGAATACAATACCTCTGATTCATATGAAGGTAAGCGTGGGGAGTCCAAATATGATAACTCTCAATCTGGCCGCAGTGTCGAAGTTACTGTTCCTTCAGGAGGCCGAAACAGTTCATATACAGAAAATGGTTCCCGTAGGCATTTTGGTCGCCGGGGTCCTACACACAGTGGGAAGGATGATGGCTCTTCAAAAAGGGGAGCCACGGCTGGCCATGGTCCCCATGAGAAACAGGTGTGGGTTCAGAAGTCAGCCGCAGGTTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62874.p1 GENE.R_Transcript_62874~~R_Transcript_62874.p1 ORF type:complete len:502 (+),score=125.33,Smg4_UPF3|PF03467.11|2.6e-49 R_Transcript_62874:311-1816(+)
MKDPLNRTKVVIRHLPPNLSQSAFFEQIDVRFDGRYNWSSFRPGKISHKNQRYARAYVNFNSPGDVFEFAEFFNGHVFVNEKGAQFKAIVEYSPSQRVPKLNAKKDGREGTLYKDPEYVEFVEWISKPVENLPSADIQLERREAERAGVQEAPVVTPLMEYVRKKRAAKSGNQHGAGSDVKAGGRSGMSPGKSRSSKQGSEKKKYIMKASGKSTNGKDKSTYIILSQRENQLDASGRKSVESESGSVSLDTPKRKYLLVKGKEQEISQASDVIMQPKGSNSGVEATPASGSFKLNQRSDASGRIIRSILMKETRQNQSSSSVQTEQKLQGMNAEKGKRPPRPSSMRSGGQTSTNEQSVGSDYVGKRYAEDKSPGNESLGFGAGLEKPDRRTRSRERLDRGVWTPRRSDSSHANDEYNTSDSYEGKRGESKYDNSQSGRSVEVTVPSGGRNSSYTENGSRRHFGRRGPTHSGKDDGSSKRGATAGHGPHEKQVWVQKSAAGS*

Click here to download the sequence:
Link to NCBI Protein BLAST