Transcript Information: R_Transcript_62880.p1


Annotated TAIR IDAT5G13010.1
Annotated Gene NameRNA helicase family protein
Annotated Gene Symbol(s)EMB3011
Annotation TypeOrtholog
Chromosome Positionchr5:4122747-4128660 | Forward length=1255
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.923915005116
Replicate 211.020608694402
Replicate 312.058990165315
Condition 2: 8 Hour
Replicate 113.842320230674
Replicate 216.866295012403
Replicate 317.812855834314
Condition 3: 24 Hour
Replicate 116.049042533208
Replicate 212.571154562048
Replicate 315.760508973614


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62880.p1 GENE.R_Transcript_62880~~R_Transcript_62880.p1 ORF type:complete len:1286 (+),score=317.96,HA2|PF04408.19|3.9e-22,OB_NTP_bind|PF07717.12|1.2e-20,Helicase_C|PF00271.27|5.5e-11,DEAD|PF00270.25|2.2e-07,DUF2075|PF09848.5|5.3e-06,AAA_22|PF13401.2|5.7e-05,AAA_22|PF13401.2|2.3e+03 R_Transcript_62880:531-4388(+)
ATGATGGAGAAACATGATGATGTGCCCGTCAACATTGATACTACATTTGTCACAATGGAAGCAGAACAACCAAGTGGTGGAGGACTGTATGTACCTGGGAAAAATCGTGTTGTTTATAGACGTCCAGAGAATTCTCGCCTTGGATTGGATGCCCTTGCTCTTGCAAAAAGTGGTGCGTCAAAAGCTGATGGTGCATTTAAGGTTCCTAGAGAAGTAGTTACTTCCGTTGCAGCATCACTTGATGAAGAGGAGAAGTCAACTGTGACTGATGTAGATGAAGATAGGACAAAGATATCTAAAGGTCACCACATACGGCCTAGTAGGAGATATCGTGATGCTTCTGCAAGTGAGGATCCTGAACCAGAAAGCAGCTTAATTCAAGATACTGAAGCAAGTGATAGATCGGACAGACATCGTTCAAAACAAAGGGTTCGCTCTGAGTGCTCAATGAACAACAGAGATGACAACCTTGACGACAGAAGGAACTCTAGAGATGACTCTAGAAGTGAAAGCCGGAGGGGGACGCCTAGACACAATGGACGATATGAGAGAGTTAGGGATGATGACAAAGAGAGGAGTCGGGGCACAGAGCGTGGAAGATATGAGAGAACCTACAGTAGTGGAAGACATGAGAGAGGTTACAGAGGAGACTATGAAAGAAAAAGAAGCAGTTATGAAGGATCGAGAAGAACTCCTGGAAGATCAGACTGGGATGATGGTAGATGGGAATGGGAAGAAACTCCACGTCGTGATGGTCACCCAAGCTCTAGCCAACGCTATCAACCGTCACCATCCCCAATGTTTATCGGCACATCACCTGATGCTAGATTGGTTTCTCCTTGGCAAACACCTCGCTCTGGAGCTTCCTCCTCCCCTTGGGATCACACCGCTGCATCCCCCATGCTAATTCGAGCCTCTGGATCCTCTGTACGCTCTTCAGGCTCGCGGTATGGGGAAAGGTCAAGTCAACATAGATTTTTGACTAATGATGCACAAGGATCTGAGGACATGGATGCTGATCAAAGTTCCATTGCTGCTGAACACAATCCTGAGATCACCGAAAGCATGCGCTTGGAGATGGAGTACAATTCAGACCGTGCATGGTACGATAGAGAGGAAGGAAGCGCAACATATGATGCTGACAGCTCATCATTTTATCTTGGTGACGATGCCACAAACCAGAAGAAAGAAGTGGAACTTGCAAAACGGCTGATGAGAAGCGACGGAAGCATAATGTCACGTGCTCAAAGCAAGAAGTACTCCCAAATTAATGCTGACAAACAACAATGGGAAGATCGGCAGCTTATGAGATCTGGTGCTGTCCGAGGCACTGAAGTCCAAACTGAATTTGACAATGAGGAGGAGAACAAGGTTATTCTCTTAGTTCATGATACAAAACCTCCATTCCTTGATGGTAGAGTGGTTTTTACCAAACAAGCAGAACCAGTAATGCCACTTAAAGATCCAACATCAGATATGGCTATAATATCACGTAAAGGATCTATTTTAGTTCGGGAAATTCGTGAAAAACAAAGCATGAACAAATCACGTCAACGATTTTGGGAGCTTGCCGGTTCAAAACTTGGTGATATCCTTGGTTTTGAGAAGACAGAAGAGCAGATCGATGCTGACAAAGCTGTAGTTGGTGAAGATGGAGAAATTGATTTCAAAGAAGATGCAAAATTTGCACAGCACTTGAAGAAGGATGAGGCAGTGAGTGATTTTGCAAAGACAAAGACCCTGGCCCAGCAAAGACAGTATCTTCCTATATACTCTGTACGAGATGAGTTGCTGCAGGTAATTCGTGAGAATCAAGTAGTAGTGGTGGTGGGGGAAACAGGTTCGGGAAAGACAACTCAACTGACACAGTACTTGCATGAAGATGGTTACACTTCAAATGGTATTGTTGGGTGTACACAACCAAGGCGTGTCGCTGCCATGAGTGTTGCCAAAAGAGTTAGTGAAGAGATGGAAACAGAGCTGGGAGACAAGGTTGGTTATGCTATCCGTTTTGAGGATGTTACTGGACCCAACACCATAATCAAGTACATGACAGATGGAGTACTTCTTCGTGAAACACTGAAAGATCCTGAACTGGAGAAATACCGTGTCATTGTGATGGACGAGGCACATGAGCGGTCGCTGAATACAGATGTGCTGTTTGGAATATTAAAGAAGGTGGTTGCACAGCGGCGTGACTTTAAGTTGATTGTGACATCAGCAACCCTAAATGCAGAAAAATTTTCACTTTTTTTCGGAAGTGTCCCAATTTACCACATCCCGGGGAGGACATTTCCTGTGAATATCTTGTACAGTAAGACTCCTTGTGAAGACTATGTTGAAGCTGCTGTGAAACAGGCTATGACTATCCACATAACCTCACCTCCTGGTGACATCCTGATATTTATGACTGGACAAGATGAGATTGAGGCAGCCTGTTATTCCCTTGCGGAACGCATGGAACAGCTGATTGCCTCAACTCAAAAGGCTGTTGCAAAGCTCCTGATACTGCCAATATACTCCCAGCTACCTGCTGACTTGCAGGCTAAAATATTCCAGAGAGCTGAAGATGGGGCACGAAAATGCATCGTAGCGACCAACATTGCTGAGACATCGCTGACTGTGGATGGAATATTTTATGTCATCGATACAGGTTATGGAAAAATGAAGGTTTACAACCCTCGGATGGGTATGGATGCTCTTCAAGTATTTCCAGTGAGCCGTGCTGCTGCTGATCAGCGTGCTGGACGTGCTGGTAGAACTGGTCCGGGCACATGTTACCGACTCTATACAGAGAGTGCATATCTGAATGAAATGCTCCCCAGTCCTGTGCCTGAAATTCAGAGGACAAACCTGGGTAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTGAAAACTTGTTAGACTTTGATTTTATGGACCCACCTCCACAAGAGAACATCCTCAACTCCATGTATCAGCTTTGGGTGTTAGGTGCCCTTAACAATGTTGGTAGCCTAACTGAGCTGGGTTGGAAAATGGTGGAATTCCCGTTGGATCCACCTCTAGCTAAGATGCTTCTGATGGGTGAACAGCTAGGATGCATGGATGAGGTGTTGACTATCGTGTCAATGCTCTCAGTTCCAACGGTATTTTTCCGTCCTAAAGACCGGGAAGAGGAGAGTGACGCTGCTAGGGAGAAATTCTTTGTCCCTGAATCAGACCACTTGACCTTGCTTAATGTGTACCAGCAGTGGAAAAGCAATGATTACCGGGGAGACTGGTGCAATGATCACTTTCTGCAAGTTAAAGCTTTACGGAAGGCAAGGGAGGTCAGATCCCAGCTCTTGGATATTATGAAACAACTAAAGATAAAGCCGACTTCCTCACCTGATTGGGATGTTGTTAGACAAGCGATATGTTCTGCATATTTCCACAATTCTGCGAAGCAGAAGGGAATTGGCGAGTATGTCAACACCAGAAACGGCATGCCATGTCATTTGCATCCAAGCAGTGCTCTGTATGGGTTGGGTTACACACCAGAGTATGTAGTTTATCACGAGCTGCTTTTGACCTCAAAAGAGTACATGCAGTGCGTTACTGCTGTGGAACCCCAATGGCTGGCAGAGCTGGGGCCCATGTTTTTCTCAGTCAAAGAGTCTGACACATCACTGTTGGAACATAAGAAGAAACAGAAGCAAGAAAAGACAGCAATGGAGGAGGAGATGGAGAACTTAAGGAAGGAGCAGGCGGAGGCAGAGAGAAGAAGCAAAGAGAAGGAGAGAGAGAAAAGAGCTAAAGAACAGCAACAAATTTCAACACCAGGGTTACGACGAGGTTCTTCAACTTACCTAAGACCCAAAAAGATGGGTTTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62880.p1 GENE.R_Transcript_62880~~R_Transcript_62880.p1 ORF type:complete len:1286 (+),score=317.96,HA2|PF04408.19|3.9e-22,OB_NTP_bind|PF07717.12|1.2e-20,Helicase_C|PF00271.27|5.5e-11,DEAD|PF00270.25|2.2e-07,DUF2075|PF09848.5|5.3e-06,AAA_22|PF13401.2|5.7e-05,AAA_22|PF13401.2|2.3e+03 R_Transcript_62880:531-4388(+)
MMEKHDDVPVNIDTTFVTMEAEQPSGGGLYVPGKNRVVYRRPENSRLGLDALALAKSGASKADGAFKVPREVVTSVAASLDEEEKSTVTDVDEDRTKISKGHHIRPSRRYRDASASEDPEPESSLIQDTEASDRSDRHRSKQRVRSECSMNNRDDNLDDRRNSRDDSRSESRRGTPRHNGRYERVRDDDKERSRGTERGRYERTYSSGRHERGYRGDYERKRSSYEGSRRTPGRSDWDDGRWEWEETPRRDGHPSSSQRYQPSPSPMFIGTSPDARLVSPWQTPRSGASSSPWDHTAASPMLIRASGSSVRSSGSRYGERSSQHRFLTNDAQGSEDMDADQSSIAAEHNPEITESMRLEMEYNSDRAWYDREEGSATYDADSSSFYLGDDATNQKKEVELAKRLMRSDGSIMSRAQSKKYSQINADKQQWEDRQLMRSGAVRGTEVQTEFDNEEENKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPTSDMAIISRKGSILVREIREKQSMNKSRQRFWELAGSKLGDILGFEKTEEQIDADKAVVGEDGEIDFKEDAKFAQHLKKDEAVSDFAKTKTLAQQRQYLPIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDPELEKYRVIVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAEKFSLFFGSVPIYHIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACYSLAERMEQLIASTQKAVAKLLILPIYSQLPADLQAKIFQRAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGSLTELGWKMVEFPLDPPLAKMLLMGEQLGCMDEVLTIVSMLSVPTVFFRPKDREEESDAAREKFFVPESDHLTLLNVYQQWKSNDYRGDWCNDHFLQVKALRKAREVRSQLLDIMKQLKIKPTSSPDWDVVRQAICSAYFHNSAKQKGIGEYVNTRNGMPCHLHPSSALYGLGYTPEYVVYHELLLTSKEYMQCVTAVEPQWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEEEMENLRKEQAEAERRSKEKEREKRAKEQQQISTPGLRRGSSTYLRPKKMGL*

Click here to download the sequence:
Link to NCBI Protein BLAST