Transcript Information: R_Transcript_62948.p1


Annotated TAIR IDAT5G55710.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22554995-22555624 | Reverse length=209
E-Value1.1E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.135980765952
Replicate 29.0534506382203
Replicate 313.344750801428
Condition 2: 8 Hour
Replicate 19.0979589941599
Replicate 27.7955367886702
Replicate 311.157412032715
Condition 3: 24 Hour
Replicate 110.215171105905
Replicate 211.128800357631
Replicate 313.453910220386


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62948.p1 GENE.R_Transcript_62948~~R_Transcript_62948.p1 ORF type:complete len:218 (+),score=34.49,TIC20|PF16166.1|1e-50 R_Transcript_62948:323-976(+)
ATGGCTACAGCTTATCTCCTTTCATCACCATCACCCCTCAACTTGTTATCACCCAAAACCAAAACCCTTTACTCAACTTCTCTTGTTCCTTCCAAAGACCACACCTTTACCTCCTTAACAAGAAAACCCATTTCCCAAACCAACCCAAAAGGTTTAATCTTTGTCCAATCCAAGAAAAACAACAGTGAAACAGCTGATATCCCAGATAGATTAATCTCAGCAATTTGCTACTTTTACCCCTTTTTTGATGGCATTCAATATGGGAAATATGTAATTACCCAATTCACACCTTTTCAAGTCCTCATTCAACCCTTAATCCCAGCTATAAGGGCTTTTAAGAGCTTCCCCTTTAATGGGTTCTTGGTGTTTTTGACCCTTTACTTTGTTGTTGTTAGGAACCCTAATTTTAGCAGCTATGTGAGGTTTAATACCATGCAAGCTATTGTGCTTGATGTTTTGTTGATTTTTCCTGATCTTTTGGAGAGAACTTTTAACCCAAAAGGTGGGGTTGGCTTGGATTTGATAATGAGTTTGGATAGTACTGTGTTTTTGTTCTTGTTGGTGAGCTTGATTTATGGGTCTTCTTCTTGTGCTTTGGGTGAAGTTCCTAGGTTGCCAATCGTTGCTGAAGCCGCTGAGAGGCAAGTCCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62948.p1 GENE.R_Transcript_62948~~R_Transcript_62948.p1 ORF type:complete len:218 (+),score=34.49,TIC20|PF16166.1|1e-50 R_Transcript_62948:323-976(+)
MATAYLLSSPSPLNLLSPKTKTLYSTSLVPSKDHTFTSLTRKPISQTNPKGLIFVQSKKNNSETADIPDRLISAICYFYPFFDGIQYGKYVITQFTPFQVLIQPLIPAIRAFKSFPFNGFLVFLTLYFVVVRNPNFSSYVRFNTMQAIVLDVLLIFPDLLERTFNPKGGVGLDLIMSLDSTVFLFLLVSLIYGSSSCALGEVPRLPIVAEAAERQVP*

Click here to download the sequence:
Link to NCBI Protein BLAST