Transcript Information: R_Transcript_62968.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.91493538620144
Replicate 20.57884537488541
Replicate 30.63151406906686
Condition 2: 8 Hour
Replicate 10.85915315604369
Replicate 20.61646541416802
Replicate 30.40943482602377
Condition 3: 24 Hour
Replicate 11.1507672795842
Replicate 20.55276338071622
Replicate 30.49370762451648


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_62968.p1 GENE.R_Transcript_62968~~R_Transcript_62968.p1 ORF type:complete len:399 (+),score=86.02,UBN2_3|PF14244.2|4.9e-43,UBN2_3|PF14244.2|3e+03,Retrotrans_gag|PF03732.13|3e-10 R_Transcript_62968:501-1697(+)
ATGTCAGGTTCTTCAAGTTCTGAGACAGTATCTTCTGCAATTGATGTTCACAGCGAACTGTATATTCATCACTCTGACGTTTCCAATTCGTTTCTTCTTGCTACACAAAAACTGAATGGCGACAATTATGGTGAATGGAGGAGATCAGCAAAAATTACTCTCAGTGCCAAAAACAAGCTAGGTTTCGTGATAGGGACTTGCAAAAAGCCAGCTGATGGGTCTTCTACCTTAAGCTACTGGGAAATGTGCAATAATATGGTAATTTCTTGGATTTTACATTCAGTTGAATCTGATATAGCTAGAAGCATACTCTATTATAATATTGCCTCTGAGATCTGGACTGAGTTAGAGGAGAGATATGCACAATCGAATGCTCCTAGGAAATATCAAGTTCATAATCATATTGCTTCTATAAGTCAAGGCAATAAAAATGTGAGTGAGTTTTATACTGAACTGAAAACTTCATGGGATGAATACATGTCTTTGATAAGTTTGCCAATCTGTACTTGTGGTACTGGAACCAAATTTTTGGAGATTCTTCAAGAACAACAATTGCTTCAATTCTTGTTGAAATTGAATGATGATTACAAAACTGCTCGTGACAATATTTTGATGCGCCAACCTCTTCCATCTCTAAGTCAAGCTTATAGATTAATTTTGCAAGAAGAAAAACAAAGAGAATGTGGTGGCAATGTCTCTCTTGGGATTGATTCAGCAGCCATGGCTGCACCATTTCATAGAAATATGACTAAGCCTCAATTTCAGTCAAACAAATCCAAGTGGAATTCTGCTACTCCTGGTGTTCAACAACAATTTCCTAGGCCTGTTCAGAATCATAATTTTGGTATTGCACCCAATGGGAGACGATCAAGATATTTCTTTGAGAATTGTAAAGTTCATGGTCATAGCATTGAGAGGTGTTTCAAAATACATGGTTTTCCTGCTGATAAGGGAAAGAAACTTGTTAATGCTGCACATCTGAACTCTCCTCTTATCAATGATTCTAGCTTAACTTCAGGACCTTCTGCTTCCTCTGCCACAACTTCTGACACTACTATTACTTCAGAACAGTATAACCACTTGCTTCAACTTCTCAATCAAAGTAATTTTGATGCTGATCTTTCTTCTGGCAATTCAGGGAGTGCTTCTGCTTTGTTGGCTGGAGCCTTCTCAGAGGCAGCCTCTGGTCCTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_62968.p1 GENE.R_Transcript_62968~~R_Transcript_62968.p1 ORF type:complete len:399 (+),score=86.02,UBN2_3|PF14244.2|4.9e-43,UBN2_3|PF14244.2|3e+03,Retrotrans_gag|PF03732.13|3e-10 R_Transcript_62968:501-1697(+)
MSGSSSSETVSSAIDVHSELYIHHSDVSNSFLLATQKLNGDNYGEWRRSAKITLSAKNKLGFVIGTCKKPADGSSTLSYWEMCNNMVISWILHSVESDIARSILYYNIASEIWTELEERYAQSNAPRKYQVHNHIASISQGNKNVSEFYTELKTSWDEYMSLISLPICTCGTGTKFLEILQEQQLLQFLLKLNDDYKTARDNILMRQPLPSLSQAYRLILQEEKQRECGGNVSLGIDSAAMAAPFHRNMTKPQFQSNKSKWNSATPGVQQQFPRPVQNHNFGIAPNGRRSRYFFENCKVHGHSIERCFKIHGFPADKGKKLVNAAHLNSPLINDSSLTSGPSASSATTSDTTITSEQYNHLLQLLNQSNFDADLSSGNSGSASALLAGAFSEAASGPW*

Click here to download the sequence:
Link to NCBI Protein BLAST