Transcript Information: R_Transcript_64135.p2


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value3E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.960132704108
Replicate 212.463044632134
Replicate 317.149429216371
Condition 2: 8 Hour
Replicate 112.570283609281
Replicate 29.4465757510891
Replicate 313.007036487336
Condition 3: 24 Hour
Replicate 113.750130532101
Replicate 210.143060238447
Replicate 314.396725542719


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_64135.p2 GENE.R_Transcript_64135~~R_Transcript_64135.p2 ORF type:complete len:187 (+),score=29.33,DDE_Tnp_4|PF13359.2|1.5e-22,DDE_Tnp_1|PF01609.17|5.8e-07 R_Transcript_64135:1628-2188(+)
ATGCTATTTACATTTTTTGTGGCTGGGTGGCCTGGTTCGGTTCATGACAACCGAATTCTAAAGGATGCACTTGAAGATTCAAAGAAGGTTTTCCCACATCCACCTGAAGGCAAATATTATGTTGTAGATGCTGGTTATCCTAACATGAAAGGATATTTGGCGCCATTTAAAGGTCAAAAATATCATTTACCTGATTTTCGACGCTCTAGCCAACCTCCAACTGGATTTTGTGAAGTGTTCAATTACAATCATGCATCGTTGAGAAATGTAGTTGAGCGCACAATAGGGGTATGGAAAAATCGATGGGCAATTTTGAGAAATATGCCAAGTTTCTCACTTCAAGTGCAAAACAAAATAATCGGAGCTACCATGGCTATACATAATTACATAAGGAGAAATGCATTAGAAGATTTAGAGTTTGACAAGTGCGATGTTGATCCAGATTATATGCCTGATGGGGGAAATGTTGAGACTGATCCTAATATTGTGTGTGAAGGTTCGATGGATGATAGAGAAATGGAAATCATTCGCCATCGAATAGCAGCTTCTTTAATGAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_64135.p2 GENE.R_Transcript_64135~~R_Transcript_64135.p2 ORF type:complete len:187 (+),score=29.33,DDE_Tnp_4|PF13359.2|1.5e-22,DDE_Tnp_1|PF01609.17|5.8e-07 R_Transcript_64135:1628-2188(+)
MLFTFFVAGWPGSVHDNRILKDALEDSKKVFPHPPEGKYYVVDAGYPNMKGYLAPFKGQKYHLPDFRRSSQPPTGFCEVFNYNHASLRNVVERTIGVWKNRWAILRNMPSFSLQVQNKIIGATMAIHNYIRRNALEDLEFDKCDVDPDYMPDGGNVETDPNIVCEGSMDDREMEIIRHRIAASLMK*

Click here to download the sequence:
Link to NCBI Protein BLAST