Transcript Information: R_Transcript_64196.p1


Annotated TAIR IDAT1G58060.1
Annotated Gene NameRNA helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21489480-21501775 | Reverse length=1459
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.979681214446
Replicate 22.1568526633094
Replicate 33.1854932086893
Condition 2: 8 Hour
Replicate 13.1142050457013
Replicate 23.4064795537236
Replicate 35.0865100340847
Condition 3: 24 Hour
Replicate 14.1872730163737
Replicate 23.698995201774
Replicate 34.5886173347793


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_64196.p1 GENE.R_Transcript_64196~~R_Transcript_64196.p1 ORF type:complete len:1431 (+),score=346.90,OB_NTP_bind|PF07717.12|1.3e-21,HA2|PF04408.19|2.5e-18,Helicase_C|PF00271.27|5.1e-13,DEAD|PF00270.25|4.3e+03,DEAD|PF00270.25|2.3e-08 R_Transcript_64196:79-4371(+)
ATGGCTCCAAAGAAGAAGCAACAACAGTCGAAAAAGAGCTCCAATAAAGGTCAATCATCATCGGCAGGCCCAAAACTTCAAATATCTGCCGAAAATGAGCAGAGGCTTCGCCGTTTACTTCTCAACAACAACAACAACAACCGCCCTTCTGCATCAACCACCACAACAACCGATGATTCTCATTCTTTATCCAAAGCTCAGAAGGCCAAGAAACTGAAGTCCATTTATGAGAAGCTCTCTTGTGAAGGTTTCTCTGATGATCACATTGAACGTGCTCTTTCTGCTCTCAAGGATGGTGCAACATTTGAAGCTGCTCTTGATTGGTTGTGCTTCAATTTGTCACGCAATGAACTACCGATGAAATTTCGTGATGGCTCATCTTTGCATACTGGAGGGTCTGTTGGTGTCATATCGACGGCACAAGAAAATTGGATTCCCCAGGTTGATACAACGTGTAGCTCTGATGATGAGGCTTCTAAGTTTTCTGTCATAAACAAAGGTTGTCGTGATGATGATGCTTTGGTTTTGCAAGAGCCATCTCAAGCTGATTGGATTCGTCAGTACATGGAGAAAGAGGAAGAGATGGAATCTGAAACTTGGGAAGACACATTGTTAGATGAAGGTTCAGACAAAAAGGCTGCCGAACCTAGGTCGTATGATACAATTGTCAAGGAGTACCAAGCTGCTAGACGTGAAGCTATAACTGCCAAAGAGAAACGGGACAAGCAAAGCCAGGAAGCTGCAAGCAAAAGAATCCGCGCACTGAAACAGGAGATGTCAGCTTTAGGGATATCTGAATCTGAGATTGTTGATTGGGAGACAACGCCTCGATACAAAGAACAAAACTTTTCTTCCGTTGCAGCAACAAATTCGATAGTTGGTGAAAATGTGATGGGGCATTTCTTAATGGATGAGAAAACAGTAGAATCATCAAGTATTTCTGTCAAGGAAGATGCATCATTAGAAAGAGAAATGGAAGACACAGAGCTTGGTAATTTCTTCACGGAAGATGACCCATTGAACACCAATTTACCTCTTGAAGTCATGAAGATACATAACAAAAGCAAAGCAAGAGCATTACTAATTGAAAAAGCTTCAGAAAAGTTGGAGGGTATATGGAAGAAGGGTGATCCAAAAAAGATTCCTAAGGCTGTTCTTCATCAAATGTGCCAAAGATCAGGCTGGGACCCTCCAAAATTTGACAAAGCTGGTAGGAAAGAAAGTGGCTTCAGTTACACTGTTAGTGTAGTTCGTAAAGCTACTGGGAGGGGCAAGAGTAGAAAATCTGGTGGTTTGATCACCCTGCAGCTACCTAGACAGGATCAAACATTTGAATCTGCTGAGGAAGCACAGAATAAAGTAGCAGCTTATGCTCTTTGGCGCTTGTTTCCTGATATACCTGTCGAGTTGCTAATTAGAGAGCCATATGATTCCCTCGTTACGAAATGGGAGGAAGGGGAATCATCAAGCACAGTTGAAGATACTCTGGAAGATCGAAGGGCGGGGTTTGTGGATTCATTATTAAACACTGATTCCTCCGTGGTGATGACTTCGGTTGATGTTGGTGATAGTAATGAGCATGAGTTTTCAGTGTCACGTGGTGAAGAATTCACTTATGCTGATGTCCAGAGAGATAACCCTCTGAAAGAAAAGGAGAGTTTCTTTCTAAGACAAGAACTACAAAAAAAACATAAGTTACAGAGATACAAGAGTATGTTAGAAGCCAGAGCAGCACTTCCTATTGCTAAATCAAAGGACGAAATGTTGCGCCAGCTAAAGAAGAATAATGTCCTGGTCATTTGTGGAGAAACAGGTTCTGGGAAGACAACTCAGGTCCCACAATATATATTGGATGACATGATTGCGGCTGGTCATGGTGGATATTGCAACATCATCTGTACACAACCACGGAGAATAGCGGCTATTTCTGTTGCTGAAAGGGTTGCTGAAGAGAGATGTGAACCTGCACCAGGTTTGGATGGATCATTGGTTGGTTATCAAGTTCGTCTAGATAGCGCAAGGAATGATCAAACTAAGCTCCTCTTCTGTACGACTGGTATCCTCTTACGTCGAATTGCGGGAAACAAGAGCTTCCACGGTGTTACTCATGTTATAGTTGATGAGGTGCATGAACGATCTTTATTGGGTGACTTTCTACTTATTGTTTTGAAGAACTTGCTGGAAAAGCAGTCTGCTAATGGAAACCCAACATTGAAAGTGATTCTTATGTCTGCAACTGTTGATTCAAGTTTGTTTTCAAGATATTTTGGCGAGTGCCCAGTTATTACTGCAGAAGGCCGAACTCATCCTGTGTCAACCTACTTTCTTGAAGATATATATGAGACTATTGGCTATCATCTTTCATCTGATTCTCCAGCCTGTTTAGGCTCTGAGACATATGGATATGAGACTATGAGTGCTTCTGTCAACAACCGTAGAGGGAAGAAAAATCTCGTCTTATCTTCATGGGGGGATGAATCTCTGCTTTCAGACGAGTGCATGAATCCATACTATGAACCCAGCTCTTATCAAGCTTACAGTGAACAAACACAACTGAATCTGAAAAAATTGAATGAAGATGTAATTGATTATGATCTTCTTGAAGACTTGGTGTGTCACATTGATGAAAATTGTGGTGATGGCGCTATTCTTGTCTTCTTGCCTGGGGTTTCCGAAATTCACAGATTATATGATAAATTAGCTGCCTCTTATCGCTTTGGTGGAGAATCTGCTGAGTGGCTCCTGCCATTACATTCTTCTGTAGCCACCACTGACCAAAAAAGGGTTTTTCAACAGCCACCTAAAGATATGCGCAAGGTTATAATAGCGACAAATATTGCAGAGACGAGCTTAACCATAGATGATGTAGTTTATGTTATTGATTCCGGAAGGCACAAGGAGTACCGCTATGACCCAAAAAAGAAACTTTCTATGATGGTTGAAGATTGGATATCTCAAGCAAATGCAAAGCAGCGACGAGGAAGAGCTGGACGTGTAAAACCTGGCATATGTTATTGTTTGTATACACACCAGAGATTTGAAAAGCTAATGCGCCGATTCCAGGTCCCTGAGATTTTAAGAATGCCTCTGGTAGAACTTTGCCTGCAGATTAAGCTTCTTTCTCTTGGTGACATAAAATTTTTGTTGTCCAAGGCACTTGATGTTCCAAAGGTTGAAGCTGTGAACTCAGCTATATCATCACTAAAGGAGGTTGGTGCTGTTGATGAAAATGAAGAACTCACTCCACTTGGGCATCATTTGGCCAAATTGCCAGTTGATCTGCTTCTTGGAAAGATGATGTTGTATGGTGCAATGTTTGGTTGTCTCTCGCCAATCTTGTCAATTTCAGCATTTCTGAGCCACAAGTCACCTTTTGTTCACTCCAAAGATGAGAGGGAATCTGTTGAAAGATCAAAATTGGCCATTTTGATAGACAAGACAGATGGATCACGTGATCCAGGTGATTATGAGAGGGAGTCTGATCACATCATAATGATGGTTGCCTACAAAAAATGGGAAAGGATTCTAAAAGATAAAGGAGCTAAAGCTGCACAAACTTTCTGCAAGTCATACTCTCTTAGCAGCTCAGTTATGCACATGATAAGGGATATGCGAGTACAGCTTGGAACTCTATTAGCTGATATTGGGCTTATCCATCTTCCGAAAGATTATCAGATCCGGGTTCAGAAGAAGGGAAACTTGGACGGTTGGTTTTCTGATGTATCACAGCCCTTTAACAAGTATGCAAATCATTCTGTCATCGTGAAGGCAATACTATGTGCAGGCTTGTACCCTAATGTAGCTGCACACATAGAGGGTATTCATGCTCAAGCTCTTGGGAACCTAAGACAATCGCTTAAACCTACATCCAAGGGTAGGCCGTCCTGGTACGATGGACGAAGAGAAGTTCACATACATCCTTCTTCTATCAACAGTGATTCAAAGGCTTTTCAGTATCCATTCCTTGTTTTCCTTGAAAAGGTTGAGACCAACAAGGTCTTCCTGCGTGACACTACAATCATCTCCCCCTATTCTCTTTTGCTTTTTGGTGGGACCATTAATGTTCAGCATCAGATGGGACTTGTCACAGTAGATAGTTGGTTGAATGTAGCTGTTCCAGCCCAAACTGCTGTGTTGTTCAAGGAGCTCAGATCTACGCTTCAATATGTTCTCAATGATTTGATCAATAAGCCACAGGTACTCTCCACAGCACCCCCTGCCCAAAAGAGAAAAAAATTACCTCCTGTTGCTTGTTTTATAAGCTGCTTGTTATTCGGATTCAGGCAGACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_64196.p1 GENE.R_Transcript_64196~~R_Transcript_64196.p1 ORF type:complete len:1431 (+),score=346.90,OB_NTP_bind|PF07717.12|1.3e-21,HA2|PF04408.19|2.5e-18,Helicase_C|PF00271.27|5.1e-13,DEAD|PF00270.25|4.3e+03,DEAD|PF00270.25|2.3e-08 R_Transcript_64196:79-4371(+)
MAPKKKQQQSKKSSNKGQSSSAGPKLQISAENEQRLRRLLLNNNNNNRPSASTTTTTDDSHSLSKAQKAKKLKSIYEKLSCEGFSDDHIERALSALKDGATFEAALDWLCFNLSRNELPMKFRDGSSLHTGGSVGVISTAQENWIPQVDTTCSSDDEASKFSVINKGCRDDDALVLQEPSQADWIRQYMEKEEEMESETWEDTLLDEGSDKKAAEPRSYDTIVKEYQAARREAITAKEKRDKQSQEAASKRIRALKQEMSALGISESEIVDWETTPRYKEQNFSSVAATNSIVGENVMGHFLMDEKTVESSSISVKEDASLEREMEDTELGNFFTEDDPLNTNLPLEVMKIHNKSKARALLIEKASEKLEGIWKKGDPKKIPKAVLHQMCQRSGWDPPKFDKAGRKESGFSYTVSVVRKATGRGKSRKSGGLITLQLPRQDQTFESAEEAQNKVAAYALWRLFPDIPVELLIREPYDSLVTKWEEGESSSTVEDTLEDRRAGFVDSLLNTDSSVVMTSVDVGDSNEHEFSVSRGEEFTYADVQRDNPLKEKESFFLRQELQKKHKLQRYKSMLEARAALPIAKSKDEMLRQLKKNNVLVICGETGSGKTTQVPQYILDDMIAAGHGGYCNIICTQPRRIAAISVAERVAEERCEPAPGLDGSLVGYQVRLDSARNDQTKLLFCTTGILLRRIAGNKSFHGVTHVIVDEVHERSLLGDFLLIVLKNLLEKQSANGNPTLKVILMSATVDSSLFSRYFGECPVITAEGRTHPVSTYFLEDIYETIGYHLSSDSPACLGSETYGYETMSASVNNRRGKKNLVLSSWGDESLLSDECMNPYYEPSSYQAYSEQTQLNLKKLNEDVIDYDLLEDLVCHIDENCGDGAILVFLPGVSEIHRLYDKLAASYRFGGESAEWLLPLHSSVATTDQKRVFQQPPKDMRKVIIATNIAETSLTIDDVVYVIDSGRHKEYRYDPKKKLSMMVEDWISQANAKQRRGRAGRVKPGICYCLYTHQRFEKLMRRFQVPEILRMPLVELCLQIKLLSLGDIKFLLSKALDVPKVEAVNSAISSLKEVGAVDENEELTPLGHHLAKLPVDLLLGKMMLYGAMFGCLSPILSISAFLSHKSPFVHSKDERESVERSKLAILIDKTDGSRDPGDYERESDHIIMMVAYKKWERILKDKGAKAAQTFCKSYSLSSSVMHMIRDMRVQLGTLLADIGLIHLPKDYQIRVQKKGNLDGWFSDVSQPFNKYANHSVIVKAILCAGLYPNVAAHIEGIHAQALGNLRQSLKPTSKGRPSWYDGRREVHIHPSSINSDSKAFQYPFLVFLEKVETNKVFLRDTTIISPYSLLLFGGTINVQHQMGLVTVDSWLNVAVPAQTAVLFKELRSTLQYVLNDLINKPQVLSTAPPAQKRKKLPPVACFISCLLFGFRQT*

Click here to download the sequence:
Link to NCBI Protein BLAST