Transcript Information: R_Transcript_64716.p2


Annotated TAIR IDAT4G30150.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14742452-14749764 | Forward length=2009
E-Value7E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3930831257026
Replicate 21.0272162630283
Replicate 31.0310273282026
Condition 2: 8 Hour
Replicate 10.91043333463338
Replicate 20.70014502829544
Replicate 30.92356531532302
Condition 3: 24 Hour
Replicate 11.0333259613252
Replicate 20.86321952604999
Replicate 31.541990936846


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_64716.p2 GENE.R_Transcript_64716~~R_Transcript_64716.p2 ORF type:complete len:511 (+),score=84.65 R_Transcript_64716:95-1534(+)
ATGGCGGACTCAGAAGCAAGGAAAAGCAAATCAGTAAAGAAGGGAAAAAAGAGAAAGCTCACAGATACAGAACACCACCAGCACAAGTCAAAGCCTTCCAAATTAGCCCGCAACGAAAATGAAAGACGACAATCAGAAGAACAAGTACAACAGCTGTGTGCTGTTCAAGAGAAAGAAACACTGGCAAATATGGAGGTGGAAGAACAACAAACCACGTTGAAAAGTCAAGAGGTTCATCAATGGAGGAACTTAGAGTTGGTTTTGTCAATCCAAAGCAAAGAATTTAGTGCCCACAAGAAAGTAGAGTTAATCTTTGATTTTGTGAATTCAAGAGCCAACAAAGAAGAAAATGACACAATAAATGATTTCAATGTGCTGAGTATGTCCCAATTGATAACATACACAAGTAGCTGGATTCAGTCAATCTTACTTACGTCTGAAAGGAGGATTCGGGCTGGAGACAATGAGTCTGAAGAATCACAGTTGTGCCTGGATCATAGATGCTGGGAGGTATTTAAATTTTGCTTGGAGAATTCCTTAAAGTTGCACGTTTCTTTGAGCTTATCACGGGATCTATTGAAGGTGATCTCATGTGTTGCCAAAAGTGCATTGAACTTGATCAAGTCTGTTCATGCAGATATCAAAGAATCCATTTATAGCCTTGAAGAGTTTCAGTTTTACAATACTGTGAGTGACTGCATAAAATTTCTATTTTCTTCCCATGGCCGACTGCTGAATGGGAATCTGGACTTGTGGGCTGTGACTGTTAACCCAGTGCTTGAGCTTGTAATTAAAATTTATAGCGAGAATCTTCAAGATAGTGGTGTAGGGATATTGAATTTACAGTTTTCATGTTGGGTCCTTGACCCGTTTTCCAAGTTTCTAAGAATGCACCCAGGTCGCAAGAATGGATTTCGTGATTTTGTAGACAAACTTTTACAACCACTACTGCATTTGCTTGGTTTGTTGCATGATCAGATCAGGGACAGCAACCATGTTTTGAGGCAAAACTTATTCAATTTGGTTGAAGAGATTTTGTCTTATGGACTGTTTCATCCAGTTCACCTCGATGAATACCTTAGCATCCATAGTGCAGAGAAATATAGCTCTTCAGCGGATGGAAAATTGGAAAATACAAGAACAACAATCAAAAGTTATCACAGACACCTTTTTGACAAACTAGAGAGCCTAATTTCTGAGAGAAAGGTACAGGCTATGACTGGCATTGGAGAAATGTTTCGCTTGTTTGTTGATTGTGTGAAAAAGCACAAGAAGGATTCACTTGATGCAGAGAATTCCAAGGATGCAAGAAGTCAGCCCACAAAGCATGGTGGGAAGAGTGGTAATTCTTCTTTAGAGAGGAGCGATCATGTGAATACTCCTAACTCAGTTATGAGGAAGCCGGTTTTCCATTTCTTTGTGCTCACTTTGGAGCCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_64716.p2 GENE.R_Transcript_64716~~R_Transcript_64716.p2 ORF type:complete len:511 (+),score=84.65 R_Transcript_64716:95-1534(+)
MADSEARKSKSVKKGKKRKLTDTEHHQHKSKPSKLARNENERRQSEEQVQQLCAVQEKETLANMEVEEQQTTLKSQEVHQWRNLELVLSIQSKEFSAHKKVELIFDFVNSRANKEENDTINDFNVLSMSQLITYTSSWIQSILLTSERRIRAGDNESEESQLCLDHRCWEVFKFCLENSLKLHVSLSLSRDLLKVISCVAKSALNLIKSVHADIKESIYSLEEFQFYNTVSDCIKFLFSSHGRLLNGNLDLWAVTVNPVLELVIKIYSENLQDSGVGILNLQFSCWVLDPFSKFLRMHPGRKNGFRDFVDKLLQPLLHLLGLLHDQIRDSNHVLRQNLFNLVEEILSYGLFHPVHLDEYLSIHSAEKYSSSADGKLENTRTTIKSYHRHLFDKLESLISERKVQAMTGIGEMFRLFVDCVKKHKKDSLDAENSKDARSQPTKHGGKSGNSSLERSDHVNTPNSVMRKPVFHFFVLTLEP*

Click here to download the sequence:
Link to NCBI Protein BLAST